Published October 29, 2020 | Version V0
Dataset Open

Comparability of Raman Spectroscopic Configurations: A Large Scale Cross-Laboratory Study

Creators

  • 1. Leibniz Institute of Photonic Technology Jena
  • 2. Chemometrix GmbH, Södeler Weg 19, 61200 Wölfersheim, Germany
  • 3. International Iberian Nanotechnology Laboratory (INL), Avda Mestre José Veiga, 4715-310 Braga, Portugal
  • 4. Nofima, Norwegian Institute of Food, Fisheries and Aquaculture Research, Norway
  • 5. Université de Reims Champagne-Ardenne, BioSpecT-EA7506, Reims, France
  • 6. National Institute of Optics, National Research Council, Sesto Fiorentino, Italy
  • 7. ICFO-Institut de Ciencies Fotoniques, The Barcelona Institute of Science and Technology, Castelldefels, 08860, Barcelona, Spain
  • 8. Institute of Physics Belgrade, University of Belgrade, Serbia
  • 9. Genetics and Bioengineering Department, Faculty of Engineering, Yeditepe University, Istanbul, Turkey
  • 10. Faculty of Physics, Babes-Bolyai University, Cluj-Napoca, Romania
  • 11. Faculty of Chemistry, Jagiellonian University, 2 Gronostajowa Str., 30-387 Krakow, Poland
  • 12. Department of Physics, University of Florence, Italy
  • 13. University of Coimbra, "Molecular Physical Chemistry" R&D Unit, Department of Chemistry, 3004-535 Coimbra, Portugal
  • 14. HORIBA France SAS
  • 15. Raman Lab, Dept. Engineering and Architecture, University of Trieste, Italy
  • 16. University of Tours, Faculty of pharmacy, EA6295 NanoMédicaments et Nanosondes, Tours, France
  • 17. NMI Natural and Medical Sciences Institute at the University of Tübingen, Reutlingen, Germany
  • 18. 24. FOCAS Research Institute, Technological University Dublin, City Campus, Dublin 8, Ireland
  • 19. LBN, University Montpellier, Montpellier, France
  • 20. Leibniz Institute of Photonic Technology Jena, Member of Leibniz Health Technologies, Germany
  • 21. Univ. Lille, CNRS, UMR 8516 - LASIRE – LAboratoire de Spectroscopie pour les Interactions, la Réactivité et l'Environnement, F-59000 Lille, France
  • 22. FOCAS Research Institute, Technological University Dublin, City Campus, Dublin 8, Ireland
  • 23. Center for Protein Diagnostics (ProDi), Ruhr University Bochum, Germany
  • 24. Manchester Institute of Biotechnology, School of Chemistry, University of Manchester, M1 7DN, UK
  • 25. Mass Spectrometry Laboratory, MolSys Research Unit, University of Liege, Liege, Belgium
  • 26. Univ. Lille F-59000 Lille, France, Univ. Littoral Côte d'Opale, F-62300 Boulogne-sur-Mer, France, ULR 4490, MABLab, Marrow Adiposity and Bone Lab.
  • 27. Department of Physics and Biophysics, School of Medicine, University of Zagreb, Šalata 3, Croatia
  • 28. Physics and Astronomy, College of Engineering, Mathematics and Physical Sciences, Exeter, EX4 4Q, UK
  • 29. Department of Chemical Engineering and Analytical Science, School of Engineering, The University of Manchester, UK
  • 30. 4th Department of Internal Medicine, ATTIKON University Hospital, 1 Rimini Str, 12462 Athens, Greece
  • 31. Faculty of Pharmaceutical Sciences, University of Iceland, Reykjavik, Iceland
  • 32. Gdańsk University of Technology, Faculty of Electronics, Telecommunications and Informatics, Poland
  • 33. Department of Biochemistry, Institute of Integrative Biology, University of Liverpool, Liverpool, UK, L69 7ZB
  • 34. Materials Research and Technology, Luxembourg Institute of Science and Technology, Luxembourg
  • 35. Department of Otorhinolaryngology, Jena University Hospital, Jena, Germany
  • 36. Ruđer Bošković Institute, Bijenička 54, Zagreb, Croatia
  • 37. Biophotonics Research Unit, Gloucestershire Hospitals NHS Foundation Trust, UK
  • 38. Renishaw GmbH, Germany
  • 39. Institute of Chemical Technologies and Analytics, TU Wien, Austria
  • 40. Chair of Bioanalytical Chemistry, TU Dresden, 01062 Dresden, Germany
  • 41. University of Coimbra, Department of Life Sciences, 3000-456 Coimbra, Portugal
  • 42. Jagiellonian Centre for Experimental Therapeutics (JCET), Poland
  • 43. Istituti Clinici Scientifici Maugeri IRCCS, Pavia, Italy
  • 44. National Research Council, Institute for Microelectronics and Microsystems (IMM-CNR), Rome, Italy
  • 45. School of Physics and Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK
  • 46. European Laboratory for Non-linear Spectroscopy, Italy
  • 47. Department of Biophysics, Faculty of Biology and Biotechnology, Ruhr University Bochum, Germany
  • 48. Université de Reims Champagne-Ardenne, PICT, Reims, France
  • 49. Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche (ISM-CNR), Via del Fosso del Cavaliere, 100-00133 Rome, Italy
  • 50. Gdansk University of Technology, Chemical Faculty, 11/12 Narutowicza St., 80-233 Gdansk, Poland
  • 51. Faculty of Chemistry, University of Duisburg-Essen, Universitaetsstr. 5, 45141 Essen, Germany
  • 52. Institute of Molecular Biotechnology, Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria
  • 53. CellTool GmbH, 82327 Tutzing, Germany

Description

Slightly processed raw data for the paper 'Comparability of Raman Spectroscopic Configurations:  A Large Scale Cross-Laboratory Study'

  • The processing include a spike removal to allow an interpolation to a common wavenumber axis.
  • Always three files belong to each other: wavenumber axis file (wx_XYZ), spectral intensity file (spec_XYZ) and metadata file (meta_XYZ). The ‘XYZ’ refers to the samples measured (see the publication and its SI for details).

Notes

This publication is based upon work from COST Action BM1401 Raman4Clinics, supported by COST (European Cooperation in Science and Technology). COST is a funding agency for research and innovation networks (www.cost.eu). Our Actions help connect research initiatives across Europe and enable scientists to grow their ideas by sharing them with their peers. This boosts their research, career and innovation. The authors would like to thank MD for preparing gelatine and agar gels. RK portioned, packaged and shipped the samples with the help of CS and M. Spreemann who did the customs declarations for samples shipped outside the EU. The authors highly thank M. Bedoni, L. Colombo, H. Dehghani, A. Mourka, W. Nahm, A. Pifferi, and L. Spinelli, who have actively contributed to the parallel discussion session 'Open Data' at the workshop 'Performance Assessment and Standardization in Biophotonics' taking place on 12.09.2019 in Brussels. The ideas and suggestions listed in the conclusion of this manuscript include a collective contribution from this parallel discussion. L.A.B.C. and M.P.M.M. acknowledge the Portuguese Foundation for Science and Technology (Project UIDB/00070/2020). S.K. and P.G. acknowledge the funding from National Research Fund of Luxembourg (FNR) via the project PLASENS (C15/MS/10459961). The scholarship from China scholarship council (CSC) for S.G is highly acknowledged. This project was supported by the BOKU Core Facilities Multiscale Imaging. Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 441958208.

Files

meta_agar.csv

Files (1.5 GB)

Name Size Download all
md5:1d37e5d689291153c8d1ea9ff017b73c
88.3 kB Preview Download
md5:f0e5e0cfb4b89bf603a6b964659892f1
249.3 kB Preview Download
md5:5bbae00cc3e666279b6b9778b1061691
243.2 kB Preview Download
md5:e9064e00c90caaa03aa18da0f1b27434
290.3 kB Preview Download
md5:37bd82b4cd940e2d1d7814584782eadc
1.1 MB Preview Download
md5:f8228aa33c93f9cefe911c5a2bceaa13
328.0 kB Preview Download
md5:66297c29fe7206f8d866320f572bca42
52.3 MB Preview Download
md5:45999f7d543b7bf745197a5e07fd271d
146.8 MB Preview Download
md5:2c34547d4b341183d3c3348e1522ed1c
128.2 MB Preview Download
md5:f7845964d27931f7269fc3d558a57304
191.7 MB Preview Download
md5:a1cc58a1e4f516be49435c3d1fed4bab
426.0 MB Preview Download
md5:7112e369a1fa5400d076cfdc888a487b
184.9 MB Preview Download
md5:d8fa0bce6ba0feb4c523978df957e3d4
15.6 MB Preview Download
md5:11bea3758f0e742115b327282c693f51
42.3 MB Preview Download
md5:888828bc80528b76b6fcdf462c6668e4
41.3 MB Preview Download
md5:5d35b665d58d4eaa953b4f61d97de29f
54.9 MB Preview Download
md5:06ca6403558d953dfc85d0ffe737ab67
145.6 MB Preview Download
md5:5ef58ed4e7f516c580dc20052e1d09fd
54.2 MB Preview Download

Additional details

Related works

Is supplement to
Journal article: 10.1021/acs.analchem.0c02696 (DOI)