iSDAsoil: soil extractable Magnesium for Africa predicted at 30 m resolution at 0-20 and 20-50 cm depths

iSDAsoil dataset soil extractable Magnesium (Mg) log-transformed predicted at 30 m resolution for 0–20 and 20–50 cm depth intervals. Data has been projected in WGS84 coordinate system and compiled as COG. Predictions have been generated using multi-scale Ensemble Machine Learning with 250 m (MODIS, PROBA-V, climatic variables and similar) and 30 m (DTM derivatives, Landsat, Sentinel-2 and similar) resolution covariates. For model training we use a pan-African compilations of soil samples and profiles (iSDA points, AfSPDB, and other national and regional soil datasets). Cite as:

Hengl, T., Miller, M.A.E., Križan, J. et al. African soil properties and nutrients mapped at 30 m spatial resolution using two-scale ensemble machine learning. Sci Rep 11, 6130 (2021). https://doi.org/10.1038/s41598-021-85639-y

To open the maps in QGIS and/or directly compute with them, please use the Cloud-Optimized GeoTIFF version.

Layer description:

• sol_log.mg_mehlich3_m_30m_*..*cm_2001..2017_v0.13_wgs84.tif = predicted soil extractable Magnesium mean value,
• sol_log.mg_mehlich3_md_30m_*..*cm_2001..2017_v0.13_wgs84.tif = predicted soil extractable Magnesium model (prediction) errors,

Model errors were derived using bootstrapping: md is derived as standard deviation of individual learners from 5-fold cross-validation (using spatial blocking). The model 5-fold cross-validation (mlr::makeStackedLearner) for this variable indicates:

Variable: log.mg_mehlich3 
R-square: 0.815 
Fitted values sd: 1.05 
RMSE: 0.498 

Random forest model:
Call:
stats::lm(formula = f, data = d)

Residuals:
    Min      1Q  Median      3Q     Max 
-5.8775 -0.2312  0.0028  0.2465  3.7400 

Coefficients:
               Estimate Std. Error t value Pr(>|t|)    
(Intercept)   -0.034349   0.051219  -0.671   0.5025    
regr.ranger    1.034217   0.003263 316.950   <2e-16 ***
regr.xgboost  -0.008057   0.003854  -2.091   0.0366 *  
regr.cubist    0.073223   0.003649  20.067   <2e-16 ***
regr.nnet     -0.017388   0.009528  -1.825   0.0680 .  
regr.cvglmnet -0.075566   0.003402 -22.213   <2e-16 ***
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

Residual standard error: 0.4979 on 136681 degrees of freedom
Multiple R-squared:  0.8152,	Adjusted R-squared:  0.8152 
F-statistic: 1.206e+05 on 5 and 136681 DF,  p-value: < 2.2e-16

To back-transform values (y) to ppm use the following formula:

ppm = expm1( y / 10 )

To submit an issue or request support please visit https://isda-africa.com/isdasoil