Published October 8, 2020
| Version 1.0.0
Dataset
Restricted
Tara Pacific 16S rRNA data analysis release
Authors/Creators
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Ruscheweyh, Hans-Joachim1
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Salazar, Guillem1
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Poulain, Julie2
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Belser, Caroline2
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Clayssen, Quentin1
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Hume, Benjamin C.C.3
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Boissin, Emilie4
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Galand, Pierre E.5
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Pesant, Stéphane6
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Lombard, Fabien7
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Armstrong, Eric2
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Lang Yona, Naama8
- Klinges, Grace9
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McMinds, Ryan
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Henry, Nicolas10
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Vega Thurber, Rebecca11
- Moulin, Clémentine12
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Agostini, Sylvain13
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Banaigs, Bernard14
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Boss, Emmanuel15
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Bowler, Chris16
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de Vargas, Colomban17
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Douville, Eric18
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Flores, J. Michel19
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Forcioli, Didier20
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Furla, Paola20
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Gilson, Eric21
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Reynaud, Stéphanie22
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Sullivan, Matthew B.23
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Thomas, Olivier24
- Troublé, Romain12
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Zoccola, Didier22
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Planes, Serge4
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Allemand, Denis22
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Voolstra, Christian R.3
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Wincker, Patrick25
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Sunagawa, Shinichi26
- 1. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
- 2. Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
- 3. Department of Biology, University of Konstanz, 78457 Konstanz, Germany
- 4. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan Cedex, France
- 5. Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650 Banyuls sur mer, France
- 6. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
- 7. Sorbonne Université, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, F-06230 Villefranche-sur-Mer, France
- 8. Weizmann Institute of Science, Dept. Plant and Environmental Science, Israel
- 9. Oregon State University, Department of Microbiology, Oregon USA
- 10. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France
- 11. Oregon State University, Department of Microbiology, 220 Nash Hall, 97331Corvallis OR USA
- 12. Fondation Tara Océan, Base Tara, 8 rue de Prague, 75 012 Paris, France
- 13. Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan
- 14. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, France
- 15. School of Marine Sciences, University of Maine, Orono, 04469, Maine, USA
- 16. Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France
- 17. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP 29680 Roscoff, France & Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016 Paris, France
- 18. Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, F-91191 Gif-sur-Yvette, France
- 19. Weizmann Institute of Science, Department of Earth and Planetary Sciences, 76100 Rehovot, Israel
- 20. Université Côte d'Azur, CNRS, INSERM, IRCAN, Medical School, Nice, France and Department of Medical Genetics, CHU of Nice, France
- 21. Université Côte d'Azur, CNRS, Inserm, IRCAN, France
- 22. Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monaco
- 23. The Ohio State University, Departments of Microbiology and Civil, Environmental and Geodetic Engineering, Columbus, Ohio, 43210 USA
- 24. Marine Biodiscovery Laboratory, School of Chemistry and Ryan Institute, National University of Ireland, Galway, Ireland
- 25. Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
- 26. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, Vladimir-Prelog-Weg 4, ETH Zürich, CH-8093 Zürich, Switzerland
Description
This data is the result of the primary analysis of the 16S rRNA gene sequencing data collected from all islands as part of the Tara Pacific expedition. The analysis was conducted using cutadapt/snakemake/dada2 and usearch. A full README is contained within the data upload.
Notes
Special thanks to the Tara Ocean Foundation, the R/V Tara crew and the Tara Pacific Expedition Participants (https://doi.org/10.5281/zenodo.3777760). We are keen to thank the commitment of the following institutions for their financial and scientific support that made this unique Tara Pacific Expedition possible: CNRS, PSL, CSM, EPHE, Genoscope, CEA, Inserm, Université Côte d'Azur, ANR, agnès b., UNESCO-IOC, the Veolia Foundation, the Prince Albert II de Monaco Foundation, Région Bretagne, Billerudkorsnas, AmerisourceBergen Company, Lorient Agglomération, Oceans by Disney, L'Oréal, Biotherm, France Collectivités, Fonds Français pour l'Environnement Mondial (FFEM), Etienne Bourgois, and the Tara Ocean Foundation teams. Tara Pacific would not exist without the continuous support of the participating institutes. The authors also particularly thank Serge Planes, Denis Allemand, and the Tara Pacific consortium.
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