Classification dataset for ENCODE-Roadmap DNase-seq peaks and Transcription Factor ChIP-seq peaks
Description
Classification dataset for machine learning on epigenomic landscapes from ENCODE and Roadmap Epigenomics. The dataset includes the original peak files (BED format) for the DNase-seq and transcription factor (TF) ChIP-seq experiments that were used to label genomic regions as positives or negatives. The DNase-seq peak files along with processing details are in the file "encode-roadmap.DNase-seq.peaks.tar.gz". The TF ChIP-seq peak files along with processing details are in the file "encode.ChIP-seq.peaks.tar.gz". The processed dataset stored in hdf5 format files along with processing details are in the file "nn.encode-roadmap.hdf5_files.tar.gz".
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Additional details
Related works
- Is compiled by
- Software: https://github.com/kundajelab/tronn (URL)
- Is supplemented by
- Dataset: https://www.encodeproject.org/ (URL)
- Dataset: https://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/ (URL)