Published October 5, 2020
| Version v1
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The amplification dynamics of MITEs and their impact on rice trait variability
Authors/Creators
- 1. Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Campus UAB, Edifici CRAG, Bellaterra, 08193 Barcelona, Spain
- 2. Laboratoire Génome et Développement des Plantes, UMR CNRS/UPVD 5096, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy., 66860, Perpignan Cedex, France
Description
MITEs are present in plant genomes in high copy numbers and are tightly associated to genes. The analysis of MITE dynamics presented here highlights their importance in rice domestication and breeding. We show that MITEs uncover more associations with agronomic traits than SNPs when used in GWAS, which highlights both their importance as drivers of genetic variability and their usefulness for association studies. Finally, our results provide new insights on the still obscure amplification mechanism of MITEs.
Notes
See README.txt for detailed information about the files
Files
GWAS.zip
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(3.1 GB)
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Additional details
Related works
- Is referenced by
- Preprint: 10.1101/2020.10.01.322784 (DOI)