Journal article Open Access
SARS-CoV-2 ORF3d Supplementary Material
Nelson, Chase W.
Supplementary data for study on SARS-CoV-2 ORF3d, available on bioRxiv. Software and example data are freely available at https://github.com/chasewnelson/SARS-CoV-2-ORF3d.
https://github.com/chasewnelson/SARS-CoV-2-ORF3d
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(821.6 MB)
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between-host_FINAL.txt
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between-host_OLGenie.txt
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between-host_SNPGenie.txt
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between-taxa_codon_OL_category.txt
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between-taxa_FINAL.txt
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between-taxa_OLGenie.txt
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between-taxa_OLGenie2.txt
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between-taxa_OLGenie_addNN.txt
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between-taxa_SNPGenie.txt
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between-taxa_SNPGenie_taxaRestricted.txt
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expression_data_by_gene.txt
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expression_data_by_gene_frame.txt
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frames_table.txt
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frameshift_results.txt
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gene_position_joiner.txt
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hydrophobicity_profiles_ORF3a.csv
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hydrophobicity_profiles_ORF3a_corr.txt
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mapped_reads_by_readlength.txt
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mapped_reads_by_readlength_sumSamples_win19read29.txt
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mapped_reads_by_readlength_sumSamples_win19read30.txt
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mapped_reads_by_readlength_sumSamples_win29read29.txt
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mapped_reads_by_readlength_sumSamples_win29read30.txt
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mapped_reads_by_readlength_sumSamples_win30read29.txt
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mapped_reads_by_readlength_sumSamples_win30read30.txt
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mapped_reads_by_readlength_wCDS.txt
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mass-spec_data.txt
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MHCI_epitope_summary.txt
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MHCI_epitope_summary_tally.txt
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MHCI_epitope_summary_test.txt
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MHCI_short_unannot_ORFs.txt
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MHCII_epitope_summary.txt
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MHCII_epitope_summary_tally.txt
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MHCII_epitope_summary_test.txt
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MHCII_short_unannot_ORFs.txt
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MHCII_short_unannot_ORFs_stripped.txt
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MHCII_short_unannot_ORFs_tally.txt
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NetMHCIIpan_E_random_tally.txt
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NetMHCIIpan_M_random_tally.txt
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NetMHCIIpan_N_random_tally.txt
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NetMHCIIpan_ORF10_random_tally.txt
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NetMHCIIpan_ORF3a_random_tally.txt
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NetMHCIIpan_ORF3b_random_tally.txt
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NetMHCIIpan_ORF3c_random_tally.txt
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NetMHCIIpan_ORF3d2_random_tally.txt
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NetMHCIIpan_ORF3d_random_tally.txt
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NetMHCIIpan_ORF6_random_tally.txt
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NetMHCIIpan_ORF7a_random_tally.txt
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NetMHCIIpan_ORF7b_random_tally.txt
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NetMHCIIpan_ORF8_random_tally.txt
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NetMHCIIpan_ORF9b_random_tally.txt
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NetMHCIIpan_ORF9c_random_tally.txt
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NetMHCIIpan_S_random_tally.txt
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NetMHCIIpan_Wuhan-Hu-1.txt
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NetMHCIIpan_Wuhan-Hu-1_additional.txt
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NetMHCpan_E_random_tally.txt
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NetMHCpan_M_random_tally.txt
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NetMHCpan_N_random_tally.txt
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NetMHCpan_ORF10_random_tally.txt
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NetMHCpan_ORF3a_random_tally.txt
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NetMHCpan_ORF3b_random_tally.txt
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NetMHCpan_ORF3c_random_tally.txt
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NetMHCpan_ORF3d2_random_tally.txt
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NetMHCpan_ORF3d_random_tally.txt
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NetMHCpan_ORF6_random_tally.txt
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NetMHCpan_ORF7a_random_tally.txt
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NetMHCpan_ORF7b_random_tally.txt
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NetMHCpan_ORF8_random_tally.txt
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NetMHCpan_ORF9b_random_tally.txt
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NetMHCpan_ORF9c_random_tally.txt
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NetMHCpan_S_random_tally.txt
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NetMHCpan_Wuhan-Hu-1.txt
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NetMHCpan_Wuhan-Hu-1_additional.txt
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ORF_length_heatmap_data.txt
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randomized_E_aa.fasta
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randomized_N_aa.fasta
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randomized_ORF10_aa.fasta
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randomized_ORF3a_aa.fasta
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randomized_ORF3b_aa.fasta
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randomized_ORF3c_aa.fasta
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randomized_ORF3d2_aa.fasta
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randomized_ORF3d_aa.fasta
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randomized_ORF6_aa.fasta
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randomized_ORF7a_aa.fasta
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randomized_ORF7b_aa.fasta
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randomized_ORF8_aa.fasta
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randomized_ORF9b_aa.fasta
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randomized_ORF9c_aa.fasta
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randomized_S_aa.fasta
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1.3 MB | Download |
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ranodmized_M_aa.fasta
md5:702891fdb1d8c4a4c22ebc52a14e6c72 |
280.9 kB | Download |
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riboseq_sample_metadata.txt
md5:dd9811ac9b923d5318dbe9d413909bb6 |
572 Bytes | Download |
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riboseq_upstream_peaks.txt
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48.7 kB | Download |
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SARS-CoV-2-ref_N_ss13_windows.txt
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2.7 MB | Download |
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SARS-CoV-2-ref_ORF3a_ss12_windows_pangolin.txt
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SARS-CoV-2-ref_ORF3a_ss12_windows_prepangolin.txt
md5:30eec3ecd5de9f612b461dc81b9566f6 |
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SARS-CoV-2.gtf
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SARS-CoV-ref_N_ss13_windows.txt
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SARS-CoV-ref_ORF3a_ss13_windows.txt
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1.7 MB | Download |
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SARS-related-CoV_ALN.fasta
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SARS-related-CoV_ALN.gtf
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selection_three_levels.txt
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short_unannot_ORFs_aa.fasta
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| Views | 1,178 | 1,177 |
| Downloads | 2,841 | 2,841 |
| Data volume | 81.8 GB | 81.8 GB |
| Unique views | 1,146 | 1,145 |
| Unique downloads | 1,685 | 1,685 |
Indexed in
- Publication date:
- September 27, 2020
- DOI:
-
- Keyword(s):
- Genome annotation Natural selection ORF3d Overlapping genes Pandemic SARS-CoV-2
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International