Journal article Open Access

SARS-CoV-2 ORF3d Supplementary Material

Nelson, Chase W.

Supplementary data for study on SARS-CoV-2 ORF3d, available on bioRxiv. Software and example data are freely available at https://github.com/chasewnelson/SARS-CoV-2-ORF3d

https://github.com/chasewnelson/SARS-CoV-2-ORF3d
Files (821.6 MB)
Name Size
between-host_FINAL.txt
md5:0c40b055b0308908d3fa854f4540068b
5.8 kB Download
between-host_OLGenie.txt
md5:22cf263841cfd27cf7b7819ddc8c5c08
18.6 MB Download
between-host_SNPGenie.txt
md5:72ce126649f552a35453bee99ed6137e
591.7 kB Download
between-taxa_codon_OL_category.txt
md5:5fd554d43751f1240b0eb5a4c72bab09
168.6 kB Download
between-taxa_FINAL.txt
md5:7887656bf4ce6de6ed1cd5e09bce5b63
5.7 kB Download
between-taxa_OLGenie.txt
md5:3b380fe9e32b3bb79a71b2a68af910be
141.0 kB Download
between-taxa_OLGenie2.txt
md5:7cf07cca491af4044d83663bd07f4e23
46.9 kB Download
between-taxa_OLGenie_addNN.txt
md5:e1e7625d8430c737c6f7fd0321f6f109
30.3 kB Download
between-taxa_SNPGenie.txt
md5:d0df433b5dd6e4591f5487003aa31323
1.9 MB Download
between-taxa_SNPGenie_taxaRestricted.txt
md5:241080bf9a81c03d5067cf93cc465d0c
14.7 kB Download
expression_data_by_gene.txt
md5:217bd999bbf2796d44202a06c448854c
680 Bytes Download
expression_data_by_gene_frame.txt
md5:a910c4c981eb6754e5aa5d58fdfbb5d1
1.7 kB Download
frames_table.txt
md5:1632a941f5fa79ecb78e341077f217a4
27.5 kB Download
frameshift_results.txt
md5:7a9e2e9b33c3c771ed3376004708892e
9.4 kB Download
gene_position_joiner.txt
md5:0fc79ed8f4fd0ee6fa30fcca6d6e230f
4.1 MB Download
hydrophobicity_profiles_ORF3a.csv
md5:cd4cf3b9b7f3f3c8b48f9f308ea13bb5
10.4 kB Download
hydrophobicity_profiles_ORF3a_corr.txt
md5:ee4bfbe968a7883b3024e4eea1fa6689
74.8 kB Download
mapped_reads_by_readlength.txt
md5:b2ec28325245e032bf0d90bc87beac9a
96.6 MB Download
mapped_reads_by_readlength_sumSamples_win19read29.txt
md5:c284051bee9804d78e1df487244a60e4
5.6 MB Download
mapped_reads_by_readlength_sumSamples_win19read30.txt
md5:7d1f557a7fa3bfd1abdc062321473453
5.6 MB Download
mapped_reads_by_readlength_sumSamples_win29read29.txt
md5:cdfca244a8d436e39663707339c88316
5.7 MB Download
mapped_reads_by_readlength_sumSamples_win29read30.txt
md5:fd6697b8f28c20933a291b811bb5fb06
5.7 MB Download
mapped_reads_by_readlength_sumSamples_win30read29.txt
md5:62ebac3cce8786bda2e1f5f5941dfbb4
5.7 MB Download
mapped_reads_by_readlength_sumSamples_win30read30.txt
md5:f02a4be44a881c21fe4385556314bd6c
5.7 MB Download
mapped_reads_by_readlength_wCDS.txt
md5:0163e439e0550795ab5a61a86538d837
521.8 MB Download
mass-spec_data.txt
md5:641ab327eaea0c4e3e920ddb944a4db6
4.9 kB Download
MHCI_epitope_summary.txt
md5:c987b9b1c5445fb330eb28e232158a27
792.0 kB Download
MHCI_epitope_summary_tally.txt
md5:c0ea480a56f649175eb9ee95e117063a
613.0 kB Download
MHCI_epitope_summary_test.txt
md5:6f8a80e150d2246c51053f2220d7cb6e
2.2 kB Download
MHCI_short_unannot_ORFs.txt
md5:edfe3437821fd173b54251419b6458a9
138.8 kB Download
MHCII_epitope_summary.txt
md5:0bf089435704ae673d8663747a57a6be
373.7 kB Download
MHCII_epitope_summary_tally.txt
md5:21a024c7abb46285333e6eab39a8e635
170.7 kB Download
MHCII_epitope_summary_test.txt
md5:61f5519fa0a9f2d20ee2d29489f03663
2.2 kB Download
MHCII_short_unannot_ORFs.txt
md5:b83b82164201fcf7b89f73ecf41c5acd
8.9 MB Download
MHCII_short_unannot_ORFs_stripped.txt
md5:8312ce13d7f74021dd4ba097d0166467
104.7 kB Download
MHCII_short_unannot_ORFs_tally.txt
md5:0d6ddd5396e5497bb4b48dc34379bf81
73.5 kB Download
NetMHCIIpan_E_random_tally.txt
md5:d761cb53b59a35f559199d677a2fbaad
939.1 kB Download
NetMHCIIpan_M_random_tally.txt
md5:f62fc91c10dec3555a5af270206b8548
3.5 MB Download
NetMHCIIpan_N_random_tally.txt
md5:8f35f47629be2742ec25abade134d26e
7.0 MB Download
NetMHCIIpan_ORF10_random_tally.txt
md5:261bddbf319afcb4a8be581b5de3d30f
365.8 kB Download
NetMHCIIpan_ORF3a_random_tally.txt
md5:50ad4c116f46ae4a93ec72bfb03e53d9
4.5 MB Download
NetMHCIIpan_ORF3b_random_tally.txt
md5:ef669ef6aaa20bc4839d6999e4513493
111.9 kB Download
NetMHCIIpan_ORF3c_random_tally.txt
md5:cc9c35fe61e2d4494d0790387c37e9e1
410.7 kB Download
NetMHCIIpan_ORF3d2_random_tally.txt
md5:1d220258d5f0689b0d0027bc881a6726
275.4 kB Download
NetMHCIIpan_ORF3d_random_tally.txt
md5:47325c31bf00abd492f532a04542baf1
638.4 kB Download
NetMHCIIpan_ORF6_random_tally.txt
md5:2d56c8bf0424b51622df028a22958669
736.9 kB Download
NetMHCIIpan_ORF7a_random_tally.txt
md5:9df164be0552507165e5b260459b973b
1.7 MB Download
NetMHCIIpan_ORF7b_random_tally.txt
md5:2ae63f5d520d5b7fda4e23301bb5747c
429.1 kB Download
NetMHCIIpan_ORF8_random_tally.txt
md5:6378bbd77f1ccb6ea6291500c60f5343
1.7 MB Download
NetMHCIIpan_ORF9b_random_tally.txt
md5:91808b41d77d5ef9e0862b75bf8ed4a7
1.3 MB Download
NetMHCIIpan_ORF9c_random_tally.txt
md5:3e101287048f826e0f58c3689e45d2b9
896.3 kB Download
NetMHCIIpan_S_random_tally.txt
md5:92b389514b73c1794d73355d7c5bcf78
22.8 MB Download
NetMHCIIpan_Wuhan-Hu-1.txt
md5:2c091611d3a97df37214ee9a6fad69ca
24.5 MB Download
NetMHCIIpan_Wuhan-Hu-1_additional.txt
md5:fdb5a20e6c0504ce43cf12158a8d597c
286.0 kB Download
NetMHCpan_E_random_tally.txt
md5:2c858e9bc24245214f21fd7884c68330
997.4 kB Download
NetMHCpan_M_random_tally.txt
md5:78734614dd3665f61ea1aaa5ac438ca1
3.4 MB Download
NetMHCpan_N_random_tally.txt
md5:c8375a81c16dea7b607a3ef4d58f4392
6.7 MB Download
NetMHCpan_ORF10_random_tally.txt
md5:02fc95c22f4ebc752e6cfee753f40c1e
442.8 kB Download
NetMHCpan_ORF3a_random_tally.txt
md5:d500e2136ea9690fbc6f81c1221b321e
721.8 kB Download
NetMHCpan_ORF3b_random_tally.txt
md5:991e9177ca2a42cad80fc311303e5fc8
201.0 kB Download
NetMHCpan_ORF3c_random_tally.txt
md5:07510914844de5ab4db68d64758cb769
494.6 kB Download
NetMHCpan_ORF3d2_random_tally.txt
md5:989c08784471eaa53cda9c0261845efb
363.2 kB Download
NetMHCpan_ORF3d_random_tally.txt
md5:d500e2136ea9690fbc6f81c1221b321e
721.8 kB Download
NetMHCpan_ORF6_random_tally.txt
md5:14d0d51b9a1ad2621f4cd043daace772
783.2 kB Download
NetMHCpan_ORF7a_random_tally.txt
md5:41b4bb3e55c3e4884a55e6eaca2a879c
1.7 MB Download
NetMHCpan_ORF7b_random_tally.txt
md5:671a99bfc97ee08464bbd31d95c816aa
518.4 kB Download
NetMHCpan_ORF8_random_tally.txt
md5:a8c7fd54318bb49d5ed91941ba67f170
1.7 MB Download
NetMHCpan_ORF9b_random_tally.txt
md5:e9cb7f47894c59dbe1eb8ee238c36839
1.3 MB Download
NetMHCpan_ORF9c_random_tally.txt
md5:1e1b285bda6ea21179be93c6e44c5a20
961.7 kB Download
NetMHCpan_S_random_tally.txt
md5:5fdff720da8deac75249efe98231f80e
21.8 MB Download
NetMHCpan_Wuhan-Hu-1.txt
md5:9865aeed0e202aa00d80af2ed56c3568
1.3 MB Download
NetMHCpan_Wuhan-Hu-1_additional.txt
md5:214741519d0c5a4365785c54d82c4ddf
142.6 kB Download
ORF_length_heatmap_data.txt
md5:beef7f373660a8dd299fb246dfab1ede
2.6 MB Download
randomized_E_aa.fasta
md5:b995a640e4603081a78a40a25379cc55
131.9 kB Download
randomized_N_aa.fasta
md5:aea96ecacedbc03bb9e28220e84d909e
480.9 kB Download
randomized_ORF10_aa.fasta
md5:9d3efb216e737fd59d1fc9b9832d7b13
97.9 kB Download
randomized_ORF3a_aa.fasta
md5:6e4ccf3b74f82278e62400452feda7b8
338.9 kB Download
randomized_ORF3b_aa.fasta
md5:b62e89eacc465164b9d8224c062e2916
66.9 kB Download
randomized_ORF3c_aa.fasta
md5:7e2bf4b42c0fc0fdc401dcacb6208556
85.9 kB Download
randomized_ORF3d2_aa.fasta
md5:0c10ec48de3bc0e66ce83d3b5266daac
78.9 kB Download
randomized_ORF3d_aa.fasta
md5:c529b7296c3b5a41dfc3b41a5f30afb1
105.9 kB Download
randomized_ORF6_aa.fasta
md5:1f8d9844f8fe8e89611883ee6c1d9d8f
120.9 kB Download
randomized_ORF7a_aa.fasta
md5:26c62fcdb1c0b3bce5d615d50add2ca6
182.9 kB Download
randomized_ORF7b_aa.fasta
md5:79ad22c393bb6bdced353263ec92c38f
102.9 kB Download
randomized_ORF8_aa.fasta
md5:2856cd1914f919ce9aff2d388d88badb
181.9 kB Download
randomized_ORF9b_aa.fasta
md5:0285b3806f7360a2d490ff486230efce
153.9 kB Download
randomized_ORF9c_aa.fasta
md5:decc11a60a88928e410ede44090ac0ac
129.9 kB Download
randomized_S_aa.fasta
md5:d49243537cc347c8889debb5455c6d72
1.3 MB Download
ranodmized_M_aa.fasta
md5:702891fdb1d8c4a4c22ebc52a14e6c72
280.9 kB Download
riboseq_sample_metadata.txt
md5:dd9811ac9b923d5318dbe9d413909bb6
572 Bytes Download
riboseq_upstream_peaks.txt
md5:637655ae07e6b4e2915eee6f90606053
48.7 kB Download
SARS-CoV-2-ref_N_ss13_windows.txt
md5:ae1a4834f09610ea5e3fd2618e27c807
2.7 MB Download
SARS-CoV-2-ref_ORF3a_ss12_windows_pangolin.txt
md5:829779d93362106355afeb3c798bba1c
90.3 kB Download
SARS-CoV-2-ref_ORF3a_ss12_windows_prepangolin.txt
md5:30eec3ecd5de9f612b461dc81b9566f6
1.8 MB Download
SARS-CoV-2.gtf
md5:97c40969f5e56d1970341ad5739a9446
4.4 kB Download
SARS-CoV-ref_N_ss13_windows.txt
md5:21cf755d9b377d41bed4d2cbaaabd081
2.3 MB Download
SARS-CoV-ref_ORF3a_ss13_windows.txt
md5:bc8cbbd66119ec0ec19129397f205848
1.7 MB Download
SARS-related-CoV_ALN.fasta
md5:e370b8700e08422aae764a5d50b94fcf
649.3 kB Download
SARS-related-CoV_ALN.gtf
md5:98f3a64cd1cc15c72359295548ae267f
1.2 kB Download
selection_three_levels.txt
md5:d7eea4cc3119ed6a0e24cf3312cb6ef5
44.1 kB Download
short_unannot_ORFs_aa.fasta
md5:23544b2f07dd634c8b480748182fd462
6.2 kB Download
173
283
views
downloads
All versions This version
Views 173173
Downloads 283283
Data volume 7.6 GB7.6 GB
Unique views 167167
Unique downloads 241241

Share

Cite as