Combining StarDist and TrackMate example 1 - Breast cancer cell dataset
Creators
- 1. Faculty of Science and Engineering, Cell Biology, Åbo Akademi University, 20520 Turku, Finland
Description
Description: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist)
Training dataset: 72 Paired microscopy images (fluorescence) and corresponding masks
Microscopy data type: Fluorescence microscopy (SiR-DNA) and masks obtained via manual segmentation (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist for details about the segmentation)
Microscope: Spinning disk confocal microscope with a 20x 0.8 NA objective
Cell type: DCIS.COM Lifeact-RFP cells
File format: .tif (16-bit for fluorescence and 8 and 16-bit for the masks)
Image size: 1024x1024 (Pixel size: 634 nm)
Files
Breast cancer cell dataset.zip
Files
(227.1 MB)
Name | Size | Download all |
---|---|---|
md5:83e67348f71a6880b719959e379387af
|
227.1 MB | Preview Download |