Dataset Open Access

Combining StarDist and TrackMate example 3 - Flow chamber dataset

Gautier Follain; Guillaume Jacquemet

Description: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist)

Training dataset: Paired microscopy images (brightfield) and corresponding masks

Microscopy data type: brightfield microscopy and masks obtained via manual segmentation (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist for details about the segmentation)

Microscope: Images were acquired with a brightfield microscope (Zeiss Laser-TIRF 3 Imaging System, Carl Zeiss) and a 10X objective.

File format: .tif (8-bit for brightfield images and 8 and 16-bit for the masks)

Image size: 1024x1024 (Pixel size: 650 nm)

Files (359.4 MB)
Name Size
Flow chamber dataset.zip
md5:26cd2468b99e0507ec07f9e51bd65ced
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