Dataset Open Access
This repository contains 142 tar.gz archive files, each containing nucleotide sequence data that have been simulated using INDELible for testing alignment-free phylogenetic inference methods. These datasets were generated by using the results (trees and model parameters) of 142 phylogenomic analyses of real-case data as model (available here). Initial sequence length was 5 Mbs, and an indel rate of 0.01 was set with indel length drawn from [1, 50000] according to a Zipf distribution with parameter 1.5 (see INDELible manual).
Each archive contains the following files/directories:
GTR.params.trees.tsv
a tab-delimited file summarizing the real-case GTR+Γ model parameters and the phylogenetic tree used to simulate the sequence dataset (gathered from https://zenodo.org/record/4034261)tax.tsv
a tab-delimited file containing the initial (col 1) and simplified (col 2) taxon namesmodel.nwk
a Newick-formatted file containing the initial model tree (gathered from GTR.params.trees.tsv
) with simplified leaf names (following tax.tsv
)control.txt
the INDELible input file used to simulate the evolution of a sequence along the tree in model.nwk
seq/
a directory containing the simulated sequences (one FASTA file per leaf in the tree in model.nwk
)___
Criscuolo A (2020) On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference. F1000Research, 9:1309. doi:10.12688/f1000research.26930.1
Name | Size | |
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dataset.001.tar.gz
md5:87ddbe2379e1cf28c6db1ca93b5afb20 |
39.1 MB | Download |
dataset.002.tar.gz
md5:f0470542ec2a46a225704421c459a539 |
40.3 MB | Download |
dataset.003.tar.gz
md5:2eb9b0dbd52b545f0be25da6f813e14a |
56.3 MB | Download |
dataset.004.tar.gz
md5:a0a03a7757a89ea888f220e912067eda |
33.3 MB | Download |
dataset.005.tar.gz
md5:f2fc85409ff408725c36bec6e42c2b4f |
24.6 MB | Download |
dataset.006.tar.gz
md5:da1a7ebfcb0a9c9cb60d9f9fe54de5ca |
50.8 MB | Download |
dataset.007.tar.gz
md5:43cb4b82485eaf840e25f411b4c7441a |
50.4 MB | Download |
dataset.008.tar.gz
md5:6b34cb8f652f7e7eba3a41140a8d52a1 |
21.9 MB | Download |
dataset.009.tar.gz
md5:c0822897f0c041041378a3383d38df15 |
25.6 MB | Download |
dataset.010.tar.gz
md5:dd45417c3670b9d873143a39985d9b8e |
34.3 MB | Download |
dataset.011.tar.gz
md5:f07969a9d96a292a32fbba6e28c81d6c |
68.1 MB | Download |
dataset.012.tar.gz
md5:0b98bae9a6c4fe82e8bdde97b46d994d |
31.0 MB | Download |
dataset.013.tar.gz
md5:6f13e58ee4be50c00dcc17ef2c4dd844 |
19.0 MB | Download |
dataset.014.tar.gz
md5:2d46650270e407340a1da88171158a2b |
39.0 MB | Download |
dataset.015.tar.gz
md5:eafac1e5c29eff34b955c934db191a11 |
214.2 MB | Download |
dataset.016.tar.gz
md5:4b6f87f994233af644ee1e0f59492ec7 |
29.5 MB | Download |
dataset.017.tar.gz
md5:04c055bdaf60a1472de268c190968133 |
56.5 MB | Download |
dataset.018.tar.gz
md5:6521f94f669bb3c7c256214e3a2518e3 |
31.9 MB | Download |
dataset.019.tar.gz
md5:e9096da4221e696a39e9e055124a97cc |
15.7 MB | Download |
dataset.020.tar.gz
md5:f5aff9f55a15714fe14ecd10c3bbad69 |
135.9 MB | Download |
dataset.021.tar.gz
md5:531f9c72ceb16980a6e8e5759e093a7a |
29.9 MB | Download |
dataset.022.tar.gz
md5:e70d18770245d4747a56924be142ad4c |
30.3 MB | Download |
dataset.023.tar.gz
md5:861336f08f2361e968b1c7a7e8be9029 |
36.6 MB | Download |
dataset.024.tar.gz
md5:89611995dc2a8d964eb777c8600f7f24 |
57.1 MB | Download |
dataset.025.tar.gz
md5:bb536d41f2ce8797bfe1539393848705 |
42.4 MB | Download |
dataset.026.tar.gz
md5:0fe1a1799658150a4e45b3fcf6e7b094 |
23.7 MB | Download |
dataset.027.tar.gz
md5:f032e43dc3a5ed34d6850147934a13b7 |
20.9 MB | Download |
dataset.028.tar.gz
md5:6ce9b45defac1c8bfcddafde3e0014fa |
42.0 MB | Download |
dataset.029.tar.gz
md5:5012bf268b71fefbd2d8d73eb6a3f48a |
44.2 MB | Download |
dataset.030.tar.gz
md5:672add39c449194aecd0972defb10475 |
18.7 MB | Download |
dataset.031.tar.gz
md5:9a3e539ec167491932b60624473de764 |
139.4 MB | Download |
dataset.032.tar.gz
md5:05e7f756b793e486d246f719031cd55e |
27.4 MB | Download |
dataset.033.tar.gz
md5:e802d70036815782b0fba20826f4e511 |
16.3 MB | Download |
dataset.034.tar.gz
md5:51670c121a01027c55b3d528da28f6b0 |
29.5 MB | Download |
dataset.035.tar.gz
md5:16f15c73667f2f04f15112d270b79e99 |
22.5 MB | Download |
dataset.036.tar.gz
md5:ce46015444712939b337c76e1370551c |
31.7 MB | Download |
dataset.037.tar.gz
md5:92be35ba5592aa2d9f70fd693dad4e5e |
46.8 MB | Download |
dataset.038.tar.gz
md5:1f48e1bb5ad944420de99b61d11526ba |
43.6 MB | Download |
dataset.039.tar.gz
md5:c9816db3c180aa5656b0258610670cc6 |
54.6 MB | Download |
dataset.040.tar.gz
md5:9bf8f88ec8d13957ea3a23e1fda84308 |
63.8 MB | Download |
dataset.041.tar.gz
md5:a91908679dce022b372a581d72aad562 |
39.3 MB | Download |
dataset.042.tar.gz
md5:986c2e3d7c221ccaab5b77820bc61bab |
14.9 MB | Download |
dataset.043.tar.gz
md5:4014af3b383315cb4d00b2e512cb5d95 |
21.4 MB | Download |
dataset.044.tar.gz
md5:5e0aba9610847e319f8519231e2e6241 |
34.8 MB | Download |
dataset.045.tar.gz
md5:50ffb89ad1d8b0eda4a1207ebb5dce68 |
26.5 MB | Download |
dataset.046.tar.gz
md5:ef4181b98eadb063cc9d63ced5617b6c |
43.9 MB | Download |
dataset.047.tar.gz
md5:83bd18d1db7fc1b5305abe94fe0e8c98 |
69.3 MB | Download |
dataset.048.tar.gz
md5:c9177bd630476188617dddc20012c2b3 |
30.0 MB | Download |
dataset.049.tar.gz
md5:8c177daf9c5e8b6dac7d3264789bea4c |
15.0 MB | Download |
dataset.050.tar.gz
md5:4d267aacc3c734704898cf29954f621c |
29.2 MB | Download |
dataset.051.tar.gz
md5:5b98cd3b768fa389fb9c14cc1aae8cd7 |
224.0 MB | Download |
dataset.052.tar.gz
md5:188375d100adcff2f93e2bb18534ba72 |
20.5 MB | Download |
dataset.053.tar.gz
md5:fc0545221f67024b7344a0a860a68e5f |
28.0 MB | Download |
dataset.054.tar.gz
md5:f5d346d935061026799ea7e644091d9f |
33.4 MB | Download |
dataset.055.tar.gz
md5:a5d287fd6ea03712dec6bb334c08ddda |
16.4 MB | Download |
dataset.056.tar.gz
md5:11df4df9e27b5b76a02f59c5daf4448f |
20.3 MB | Download |
dataset.057.tar.gz
md5:58baee7d3eed971ec26815c3cfa17153 |
32.2 MB | Download |
dataset.058.tar.gz
md5:47fa1e35fbe7dd23a75402830f6524b1 |
15.6 MB | Download |
dataset.059.tar.gz
md5:9af49d2c701550e90bfc41c1fa7e596c |
48.2 MB | Download |
dataset.060.tar.gz
md5:2d87f2c10d92cf7847a6a68fa3ed6bdc |
16.8 MB | Download |
dataset.061.tar.gz
md5:43ab64118e7572d8a02a17536b00ecdd |
125.4 MB | Download |
dataset.062.tar.gz
md5:f01a3f25a41102c8fc0a91170483fe1f |
40.5 MB | Download |
dataset.063.tar.gz
md5:52003bac85f929b90629879405968128 |
28.4 MB | Download |
dataset.064.tar.gz
md5:25eb60cda84453a30b29f539ca291194 |
51.7 MB | Download |
dataset.065.tar.gz
md5:932655ffc26be696790e1691a67734ea |
38.1 MB | Download |
dataset.066.tar.gz
md5:fe0406bb9c9c34a40b056acfc1702310 |
24.4 MB | Download |
dataset.067.tar.gz
md5:0fb05ffe29fb7c6c1491b84ec0f7f33a |
23.1 MB | Download |
dataset.068.tar.gz
md5:9d40273fdfa9a0ed6fe783b1292180df |
25.1 MB | Download |
dataset.069.tar.gz
md5:a479cca796be1e0dbea5b805b9541b4b |
31.9 MB | Download |
dataset.070.tar.gz
md5:a84df25017a20d64baafa420cf869e6e |
15.5 MB | Download |
dataset.071.tar.gz
md5:6789e3b977ae18c32051fe787bb8deab |
38.4 MB | Download |
dataset.072.tar.gz
md5:ae882627631c7a86f2d21d019a8faa8d |
48.3 MB | Download |
dataset.073.tar.gz
md5:17defce8a377d330cd585f8faf4ee3c5 |
42.4 MB | Download |
dataset.074.tar.gz
md5:82397229f1a99d830dbd7acf894c072a |
79.4 MB | Download |
dataset.075.tar.gz
md5:227f40849c15c16e9112fc6b25dfb1e6 |
33.8 MB | Download |
dataset.076.tar.gz
md5:a0392fccbb1b7f35d9ead6c364c74e41 |
47.5 MB | Download |
dataset.077.tar.gz
md5:84b21dd9d4ad4bb5c2edce1df198a51e |
21.0 MB | Download |
dataset.078.tar.gz
md5:6edf165a626210cffbd7c461b38e8777 |
98.2 MB | Download |
dataset.079.tar.gz
md5:a8eeac8979430ee49cfce39cb03ab126 |
26.6 MB | Download |
dataset.080.tar.gz
md5:ab3f495f40e0a961bdaae8f51ef634ed |
21.8 MB | Download |
dataset.081.tar.gz
md5:0bfb5b65583bf62f221f2340df7e2f79 |
73.5 MB | Download |
dataset.082.tar.gz
md5:e85141c353a7a23cd56662a8f5e88cd4 |
178.4 MB | Download |
dataset.083.tar.gz
md5:6970970f8870b941594d886cfba6442b |
91.1 MB | Download |
dataset.084.tar.gz
md5:c47c29b207e812c7b63f85abd25ee031 |
32.5 MB | Download |
dataset.085.tar.gz
md5:a2e027cfdebdd2a0120515ed97316a3e |
48.9 MB | Download |
dataset.086.tar.gz
md5:a4e3f5dc27ba2115d2ae89261023ef35 |
108.5 MB | Download |
dataset.087.tar.gz
md5:7cfbdea2a9be370968a82afe57798783 |
38.7 MB | Download |
dataset.088.tar.gz
md5:bb063071743bad0755cbfb9d19734337 |
133.1 MB | Download |
dataset.089.tar.gz
md5:1df5c043d9f5e0776101a8d74441102e |
69.6 MB | Download |
dataset.090.tar.gz
md5:8913b5f2a38d97ab83dd4ed0b0acc94d |
41.2 MB | Download |
dataset.091.tar.gz
md5:fd865bcf198684b64c81a499c127393b |
67.6 MB | Download |
dataset.092.tar.gz
md5:75af52373f9f515823a68d5d190653ac |
25.6 MB | Download |
dataset.093.tar.gz
md5:a71fd11744b1a59167711c176cb34b04 |
31.7 MB | Download |
dataset.094.tar.gz
md5:9e9cfe7d2935165146e9854a62a1129f |
18.7 MB | Download |
dataset.095.tar.gz
md5:196d6fffe17fc5b5bcfbb70bcf6cab9f |
51.5 MB | Download |
dataset.096.tar.gz
md5:cc0bb44139bccc65183ee1b986e0e9dc |
27.1 MB | Download |
dataset.097.tar.gz
md5:f182696a375a9daed5646f91c9748826 |
107.3 MB | Download |
dataset.098.tar.gz
md5:12579f5278a48cd6540dd5e44464df04 |
72.0 MB | Download |
dataset.099.tar.gz
md5:92bfcde44b7c84f64022079fdc8e2807 |
18.2 MB | Download |
dataset.100.tar.gz
md5:03e532ddbf49c345417cbd4378fc58f5 |
15.4 MB | Download |
dataset.101.tar.gz
md5:05aaed53904f2e08307ee765baf28e72 |
105.9 MB | Download |
dataset.102.tar.gz
md5:81945458641047c7dcc1f82eb6f13b88 |
36.8 MB | Download |
dataset.103.tar.gz
md5:eabc52a2e6588c1f17c96644c2e02160 |
16.4 MB | Download |
dataset.104.tar.gz
md5:bb34574e42bff97d3bf01114c0660229 |
47.7 MB | Download |
dataset.105.tar.gz
md5:378f14473ccc17adafc0f5ca68c181f2 |
15.0 MB | Download |
dataset.106.tar.gz
md5:af89fd530baf23a9ceb41f4ef16ed979 |
45.3 MB | Download |
dataset.107.tar.gz
md5:8075d920efb7889282cc251b7cb28278 |
34.6 MB | Download |
dataset.108.tar.gz
md5:f0b57472f0e7c99ad6643dac7e970dd1 |
88.3 MB | Download |
dataset.109.tar.gz
md5:69fd3ec03498a109865b45ae19854516 |
57.4 MB | Download |
dataset.110.tar.gz
md5:57c30bf0e5c5b37683e81d07aa8b08ec |
17.0 MB | Download |
dataset.111.tar.gz
md5:3d1ae059c44d291502d07fdc83001614 |
15.9 MB | Download |
dataset.112.tar.gz
md5:667c3072526b31ac094d2827f028d100 |
17.8 MB | Download |
dataset.113.tar.gz
md5:7f4720a19573a19ba53415efe1a5a45c |
59.6 MB | Download |
dataset.114.tar.gz
md5:47eac79d20de9b20b4cc4defd0ecf755 |
26.6 MB | Download |
dataset.115.tar.gz
md5:6d2b0b06473f0569842a5694c4b6869f |
44.2 MB | Download |
dataset.116.tar.gz
md5:e0b542eb9baac817d63cde053efe90fc |
20.3 MB | Download |
dataset.117.tar.gz
md5:2006714223a98ade746dfffdc536a4cb |
208.4 MB | Download |
dataset.118.tar.gz
md5:4e1004ad9ef3fb494bf1828d58d5029e |
27.4 MB | Download |
dataset.119.tar.gz
md5:fa8ccceeb57c2ae61dbcbeda95628324 |
18.9 MB | Download |
dataset.120.tar.gz
md5:5bb7814987268263d18a1964407670bd |
39.9 MB | Download |
dataset.121.tar.gz
md5:c907c77b775a5cae524e94b7f0f79625 |
41.0 MB | Download |
dataset.122.tar.gz
md5:b4e53be50539e4c1fb92ef33f36dc9b5 |
66.8 MB | Download |
dataset.123.tar.gz
md5:cb716ebedc7683917339fcc4c65b1086 |
36.3 MB | Download |
dataset.124.tar.gz
md5:1c2366d26bc99af75249b2139a548200 |
76.0 MB | Download |
dataset.125.tar.gz
md5:36727757bcf58b5b76bd675791b762d2 |
23.2 MB | Download |
dataset.126.tar.gz
md5:f3a9ee523a013d79f982fb8d6516ef73 |
45.5 MB | Download |
dataset.127.tar.gz
md5:8fce6f24c59603d931460f632fba601b |
61.5 MB | Download |
dataset.128.tar.gz
md5:5c9028ab28ecd4dbb3a56ff8cd76e3a6 |
213.2 MB | Download |
dataset.129.tar.gz
md5:d93eba0102f56fe378e50c3cff669f6a |
49.8 MB | Download |
dataset.130.tar.gz
md5:e8ee212b3ea75b3eb449d66c4b43fa70 |
34.1 MB | Download |
dataset.131.tar.gz
md5:dda05e59c6581e296ccc478c7ce88ade |
29.2 MB | Download |
dataset.132.tar.gz
md5:f58a5a88e9c1096ed514c0cf0e249926 |
41.5 MB | Download |
dataset.133.tar.gz
md5:c507d516923bbcb0315587f3ce946887 |
24.1 MB | Download |
dataset.134.tar.gz
md5:bc63606353eda07a4b97d9bbc5254991 |
47.4 MB | Download |
dataset.135.tar.gz
md5:17e81c8bf492db3023e36a0eba9ca3a3 |
25.3 MB | Download |
dataset.136.tar.gz
md5:916726cfbdc335ab4c2b111955db367c |
37.3 MB | Download |
dataset.137.tar.gz
md5:38fe37ec0713df152c82dbcc57ea3d37 |
52.1 MB | Download |
dataset.138.tar.gz
md5:1fc63cc3c554c1e9b51c421585d628c8 |
47.7 MB | Download |
dataset.139.tar.gz
md5:ede341287de834b50a28d889b1b11d6d |
18.9 MB | Download |
dataset.140.tar.gz
md5:584c12a43e8c6392f6003cf2a759a678 |
29.5 MB | Download |
dataset.141.tar.gz
md5:57388f478d61a8b557ad2804079a7952 |
23.8 MB | Download |
dataset.142.tar.gz
md5:00a2c81ad693f70dbbbe4c09b2e1296e |
39.2 MB | Download |
All versions | This version | |
---|---|---|
Views | 53 | 53 |
Downloads | 338 | 338 |
Data volume | 14.8 GB | 14.8 GB |
Unique views | 43 | 43 |
Unique downloads | 6 | 6 |