Petra Bleeker Research Group

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Published August 17, 2020 | Version v8
Dataset Restricted

Illumina short read DNA-seq of Solanum habrochaites PI127826 and LA1777 DNA

Authors/Creators

  • 1. University of Amsterdam, SILS

Description

Illumina paired-end HiSeqX reads from the genomic DNA isolated from young leaves of three plants from S. habrochaites:

  1. Solanum habrochaites PI127826
  2. Solanum habrochaites LA1777 (wild-type)
  3. Solanum habrochaites LA1777 X-ray mutated to allow self-compatibility

Variant Call Format file (VCF files)

Variants have been called from this DNA-seq file using the Solanum lycopersicum  ITAG4.0 genome assembly and a custom-made variant-calling pipeline.

S. habrochaites PI127826 variants: PI127826.vcf.tar.gz

Files

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Please request access to these datasets by sending an email to Petra Bleeker (P.M.Bleeker@uva.nl) or Marc Galland (m.galland@uva.nl).

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Additional details

Funding

Dutch Research Council
Defence in the wild; from trichome transcriptomes and metabolomes to breeding tools for defence markers in tomato 2300178970