Published September 2, 2020 | Version v1
Presentation Open

Packaging workflows with RO-Crate

Creators

  • 1. The University of Manchester, BioExcel, ELIXIR-UK
  • 2. VIB & ELIXIR-BE

Description

Presenting how computational workflows can be packaged with the latest evolution of the Research Object specifications, RO-Crate.

Presented at ECCB 2020 Workshop on FAIR Computational Workflows.

Files

2020-09-03-eccb-fair-workflows-ro-crate.pdf

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Additional details

Cites
Journal article: 10.1038/sdata.2016.18 (DOI)
Journal article: 10.1038/s41586-019-0965-1 (DOI)
Software: https://github.com/Finn-Lab/MGS-gut (URL)
Technical note: 10.5281/zenodo.3541888 (DOI)
Documents
https://w3id.org/ro/crate/ (URL)
Software: https://github.com/ResearchObject/ro-crate-py (URL)
Is part of
https://eccb2020.info/ntbew01/ (URL)
Is supplemented by
Software: https://workflowhub.eu/workflows/53?version=1 (URL)
References
https://www.researchobject.org/ (URL)
https://www.researchobject.org/specs/ (URL)
https://github.com/researchobject/ro-crate/issues/1 (URL)
Technical note: https://w3id.org/ro/crate/1.0 (URL)
https://bioschemas.org/profiles/ComputationalWorkflow/0.5-DRAFT-2020_07_21/ (URL)
https://www.researchobject.org/ro-crate/1.1-DRAFT/#workflows-and-scripts (URL)
https://about.workflowhub.eu/Workflow-RO-Crate/ (URL)
http://mmb.irbbarcelona.org/biobb/workflows (URL)
Software: https://github.com/bioexcel/pmxlaunchCV19/ (URL)
Software: https://uts-eresearch.github.io/describo/ (URL)
https://www.commonwl.org/v1.2/Workflow.html#Operation (URL)

Funding

European Commission
BioExcel-2 – BioExcel Centre of Excellence for ComputationalBiomolecular Research 823830
European Commission
EOSC-Life – Providing an open collaborative space for digital biology in Europe 824087
European Commission
BioExcel – Centre of Excellence for Biomolecular Research 675728