Illumina short read DNA-seq of Solanum habrochaites PI127826 and LA1777 DNA
Description
Illumina paired-end HiSeqX reads from the genomic DNA isolated from young leaves of three plants from S. habrochaites:
- Solanum habrochaites PI127826
- Solanum habrochaites LA1777 (wild-type)
- Solanum habrochaites LA1777 X-ray mutated to allow self-compatibility
Variant Call Format file (VCF files)
Variants have been called from this DNA-seq file using the Solanum lycopersicum ITAG4.0 genome assembly and a custom-made [variant-calling pipeline] (https://github.com/BleekerLab/freebayes_snp_calling/releases/tag/v0.1.0).
S. habrochaites PI127826 variants: [PI127826.vcf.tar.gz](https://zenodo.org/api/files/5ff35841-acab-43cc-842f-2f140ccc0ba6/PI127826.vcf.tar.gz)
Files
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Please request access to these datasets by sending an email to Petra Bleeker (P.M.Bleeker@uva.nl) or Marc Galland (m.galland@uva.nl).
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Additional details
Funding
- Dutch Research Council
- Defence in the wild; from trichome transcriptomes and metabolomes to breeding tools for defence markers in tomato 2300178970