TARA-PACIFIC_telomere-length
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Rouan, Alice1
- Djerbi, Nadir1
- Leone, Camille1
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Lycia, Die Morini1
- Tran, Jessica1
- Wurzer, Lia1
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Ottaviani, Alexandre1
- Giraud-Panis, Marie-Josèphe2
- Moulin, Clémentine3
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Boissin, Emilie4
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Bourdin, Guillaume5
- Iwankow, Guillaume4
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Poulain, Julie6
- Romac, Sarah7
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Agostini, Sylvain8
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Banaigs, Bernard9
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Boss, Emmanuel10
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Bowler, Chris11
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de Vargas, Colomban12
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Douville, Eric13
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Flores, J. Michel14
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Forcioli, Didier1
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Furla, Paola1
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Galand, Pierre E.15
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Lombard, Fabien16
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Reynaud, Stéphanie17
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Sullivan, Matthew B.18
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Sunagawa, Shinichi19
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Thomas, Olivier20
- Troublé, Romain3
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Vega Thurber, Rebecca21
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Voolstra, Christian R.22
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Wincker, Patrick23
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Planes, Serge24
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Allemand, Denis17
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Pesant, Stéphane25
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Zoccola, Didier17
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Gilson, Eric2
- 1. Université Côte d'Azur, CNRS, INSERM, IRCAN, MedicalSchool, Nice, France and Department of Medical Genetics, CHU of Nice, France
- 2. Université Côte d'Azur-CNRS-INSERM, IRCAN, Medical School, Nice, France and Department of Medical Genetics, CHU of Nice, Nice, France.
- 3. Fondation Tara Océan, Base Tara, 8 rue de Prague, 75 012 Paris,France
- 4. Laboratoire d'Excellence "CORAIL," PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, Perpignan Cedex, France
- 5. School of Marine Sciences, University of Maine, Orono, Maine, United States of America
- 6. Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
- 7. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France
- 8. Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Jap
- 9. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, Fran
- 10. School of Marine Sciences, University of Maine, Orono, 04469, Maine, US
- 11. Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, F
- 12. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP 29680 Roscoff, France & Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016 Paris, Franc
- 13. Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, F-91191 Gif-sur-Yvette,
- 14. Weizmann Institute of Science, Department of Earth and Planetary Sciences, 76100 Rehovot, Israel
- 15. Sorbonne Université, CNRS, Laboratoire d'Ecogéochimiedes Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650 Banyuls surmer, France
- 16. Sorbonne Université, Institut de la Mer deVillefranche sur mer, Laboratoire d'Océanographie de Villefranche, F-06230 Villefranche-sur-Mer, France
- 17. Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monac
- 18. The Ohio State University, Departments ofMicrobiology and Civil, Environmental and Geodetic Engineering, Columbus, Ohio, 43210 USA
- 19. Department of Biology, Institute of Microbiologyand Swiss Institute of Bioinformatics, Vladimir-Prelog-Weg 4, ETH Zürich, CH-8093 Zürich, Switzerland
- 20. Marine Biodiscovery Laboratory, School of Chemistryand Ryan Institute, National University of Ireland, Galway, Ireland
- 21. Oregon State University, Department ofMicrobiology, 220 Nash Hall, 97331Corvallis OR USA
- 22. Department of Biology, University of Konstanz,78457 Konstanz, Germany
- 23. Génomique Métabolique, Genoscope, InstitutFrançois Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
- 24. PSL Research University: EPHE-UPVD-CNRS, USR 3278CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860Perpignan Cedex, France
- 25. MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany; PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, Bremen, Germany.
Contributors
Contact person (2):
- 1. Université Côte d'Azur-CNRS-INSERM, IRCAN, Medical School, Nice, France and Department of Medical Genetics, CHU of Nice, Nice, France.
Description
Samples : High molecular weigth DNA was extracted from an apex of coral nubbins from the TARA-Pacific CS40 sampling. Telomere length was measured using Telomere Restriction Fragment assay using radioactive probes to measure the host telomere length sequence (TTAGGG)n, also referred as T2, or the symbionts telomere length sequence (TTTAGGG)n, also referred as T3.
Measurements was successfully performed for the host telomere repeat sequence on 1098 samples, for the symbiont repeat sequence on 882 samples, measurements were successfully performed several times with the host telomere probe for 248 samples and with the symbiont telomere probe for 115 samples.
File structure
Variables :
1-sampleID: TARA PACIFIC Colony ID barcod
2- sampling-design: TARA PACIFIC Colony ID encoding for sampling, the island, site and colony (ex: OA000-I01S01C001 stands for Island 1, site 1 and coral colony 1)
3-n: Number of measurements done with the host telomere probe (TTAGGG)*.
4- Mean: Host mean telomere length measured in kilobases.*
5- standard-deviation: Standard deviation of the mean measured between the number of measurements done with the host telomere probe (TTAGGG)*.
6-percentile-50: Host median telomere length measured in kilobases.*
7-percentile-75: Host 3rd quartile telomere length limit below which lies 75% of the signal, measured in kilobases.*
8-percentile-25: Host 1st quartile telomere length limit below which lies 25% of the signal, measured in kilobases.*
9-interpercentile-p75-p25-distance: Distance between host_percentile-25 and host_percentile-75 telomere length, measured in kilobases.*
10-n: Number of measurements done with the symbiont telomere probe (TTTAGGG)*.
4- Mean: Symbiont mean telomere length measured in kilobases.*
5- standard-deviation: Standard deviation of the mean measured between the number of measurements done with the symbiont telomere probe (TTAGGG)*.
6-percentile-50: Symbiont median telomere length measured in kilobases.*
7-percentile-75: Symbiont 3rd quartile telomere length limit below which lies 75% of the signal, measured in kilobases.*
8-percentile-25: Symbiont 1st quartile telomere length limit below which lies 25% of the signal, measured in kilobases.*
9-interpercentile-p75-p25-distance: Distance between symbiont_percentile-25 and symbiont_percentile-75 telomere length, measured in kilobases.*
* When signal was undetected measurements is encoded by “not available”.
Files
TARA-PACIFIC_telomere-length.txt
Files
(185.5 kB)
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