Published August 20, 2020 | Version v1
Dataset Open

Structural dynamics of DNA depending on methylation pattern: Simulation dataset

Authors/Creators

  • 1. Hiroshima University; RIKEN
  • 2. Nagoya University
  • 3. Hiroshima University

Description

Dataset of molecular dynamics simulations of double-stranded DNA
(repeats of CpG dinucleotides with regular patterns of methylation).

- Input: Parameters and initial structures
- Output: Trajectories

NAMD 2.13 (multi-core with CUDA) was used for the simulations.

Files

README.txt

Files (2.9 GB)

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Additional details

Related works

Is supplement to
Preprint: 10.1101/2020.06.29.178608 (DOI)