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Published August 21, 2020 | Version 202008021
Dataset Open

ReferenceSeeker Database

Authors/Creators

  • 1. Justus Liebig University Giessen

Description

This repository provides pre-built databases for ReferenceSeeker (https://github.com/oschwengers/referenceseeker) comprising taxon specific databases for complete, reference and representative RefSeq genomes.

  • bacteria: 24,879
  • plasmids: 26,907
  • archaea: 590
  • fungi: 327
  • protozoa: 88
  • viruses: 10,012

Files

Files (43.2 GB)

Name Size
md5:63a3d47ae0c7321928039017e6d5b3f4
560.2 MB Download
md5:862893034592d4c549b9a8531d8563cd
36.7 GB Download
md5:7d5d57f65524c30776dca150a5b15e0f
3.2 GB Download
md5:e126d9ac70721e88de43a308b74811f0
962.0 MB Download
md5:6e65598f39ebbbbfe917fa891aeb7632
1.1 GB Download
md5:8324aed5a8d00f18f9e847166f6b769c
730.9 MB Download

Additional details

Related works

Is referenced by
Software: https://github.com/oschwengers/referenceseeker (URL)

References

  • Schwengers et al. (2019). ReferenceSeeker: rapid determination of appropriate reference genomes. bioRxiv 863621; doi: https://doi.org/10.1101/863621