Journal article Open Access

An analysis of soil coring strategies to estimate root depth in maize (Zea mays) and common bean (Phaseolus vulgaris)

Burridge, James D.; Black, Christopher K; Nord, Eric A.; Postma, Johannes A.; Sidhu, Jagdeep S.; York, Larry M.; Lynch, Jonathan P.

Contains data from field and simulation trials on root length distribution profiles of maize and common bean. 

Contains code used to conduct OpenSimRoot simulations.

Contains code to calculate Voronoi area adjusted root length.

Contains code to conduct QDA, and other analysis and plots presented in manuscript.

Files (80.3 MB)
Name Size
1. Field_Cal_Voronoi.R
md5:24a4a8b31359ae51efb82c18477367ba
8.2 kB Download
2. Field_Trench_data_analysis1_192020.R
md5:6ef1b5a156698662c5b3f3919a91954e
2.7 kB Download
2015_core_length_JB_format11june18_jgdp_extraction_1172020.csv
md5:c97795918570b43759d2d9d3547cba22
15.0 kB Download
2016_core_length_JB_format11june18_jgdp_extraction_1172020.csv
md5:0e848ea9168da57286cf09056d6e9689
8.9 kB Download
3. Field_TOST_locations_and_trench_vs_voronoi.R
md5:02744f1a52882b81e746c471a336b4be
9.7 kB Download
4. Field_Calculating and plotting Manhattan distances_all_yearsAndCrops.R
md5:2204456eb0f3b3a9aafcb630f0f0095f
12.1 kB Download
alllocs_allphenotypes_data.csv
md5:7daebd83c0674a02d34a62918e011572
1.2 MB Download
ARBC2016 trench data revised 4June18 .csv
md5:197403504af9ec5dab731de1962385a1
149.8 kB Download
Burridge_coring_20190508_inputs.tgz
md5:24709b57a4b9ca67bb6eb8e9d0379adf
6.9 MB Download
Burridge_coring_20190508_outputs.tgz
md5:1597ef1c0f1e3537b3207ab0f786381d
57.4 MB Download
jb-coring-osr-latest.zip
md5:6ce75a7621c6dd5219bc142567de273b
5.1 MB Download
openSimRoot-af8addf6.zip
md5:836d210c39c869ae895381999e2ab137
5.1 MB Download
README 2nd version.txt
md5:368dfd4b5516bc814a97748e02ad55b8
13.0 kB Download
Readme.txt
md5:d57b61b40747767a27de2f697781af26
5.7 kB Download
RVW_combined_meth.csv
md5:51c20c6a9e9c886a626fefd013a7b031
1.9 MB Download
S1 - Extract_simroot_data.R
md5:a54fbc067088f70c6521fe7ebc54cb99
9.3 kB Download
S2 - Simroot_fortyday&wholeplotaverage.R
md5:220002130d4de0dcdc32e0afc2b4295c
7.0 kB Download
S3 - TOST_Comparing_Locations_to_Wholeplot.R
md5:ddb700f1a8c8b869f9269ae782b88416
7.9 kB Download
S4 - Calculating Voronoi Rustic and TOST_analysis_against_Wholeplot.R
md5:acd31468162c34e27b564971e443f1ec
14.0 kB Download
S5 - ANVAfordifferentphenotypes_veronoi.R
md5:83b809ca042a61d3981f6f2c874c6508
7.7 kB Download
S6 - Discriminant_analysis.R
md5:606455ba3400081e3447f17c65b8acde
11.8 kB Download
S7 - Simroot_Calculating and plotting Manhattan distances.R
md5:4347e3c794415a3e2730f11d78787fe3
13.4 kB Download
simrootR-latest.zip
md5:1b449356babf28ad54b2bb10a194ee71
37.6 kB Download
Simulation data_All_locations_and_ReferenceMethods_100Reps_.csv
md5:9f73c9a4d097658781b9feef59d24b68
2.2 MB Download
soilCoreTools-master.zip
md5:17565b5a2eff357c1c89d9fbdad6f87c
150.3 kB Download
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