Dataset Open Access
HADDOCK Coarse-Grained Protein-DNA Docking Dataset
Rodrigo V Honorato;
Jorge Roel-Touris;
Alexandre AMJJ Bonvin
This dataset is the result of the benchmarking done in the publication MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing in which HADDOCK's coarse-grain support is extended to Protein-DNA docking.
It contains both the All-atom and Coarse-Grained output of 46 macromolecular complexes derived from the Protein-DNA benchmark (10.1093/nar/gkn386) as well as 6 complexes with experimental information, CAPRI Target 95 (PRC1 ubiquitination module bound to the nucleosome) and all new parameters added to HADDOCK.
Files
(13.2 GB)
| Name | Size | |
|---|---|---|
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ProtDNA-CG.tar.xz
md5:59aa6ba0c57dd2b789d59aa67b2eef8c |
13.2 GB | Download |
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downloads
| All versions | This version | |
|---|---|---|
| Views | 86 | 86 |
| Downloads | 8 | 8 |
| Data volume | 105.7 GB | 105.7 GB |
| Unique views | 83 | 83 |
| Unique downloads | 7 | 7 |
Indexed in
- Publication date:
- October 1, 2019
- DOI:
-
- Keyword(s):
- Macromolecular Docking Protein-DNA Coarse-grain
- Published in:
- Frontiers in Molecular Biosciences: 6 pp. 102.
- Grants:
-
European Commission:
- BioExcel-2 - BioExcel-2 Centre of Excellence for Computational Biomolecular Research (823830)
- Related identifiers:
- Derived from
- 10.3389/fmolb.2019.00102 (Journal article)
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International