Dataset Open Access

HADDOCK Coarse-Grained Protein-DNA Docking Dataset

Rodrigo V Honorato; Jorge Roel-Touris; Alexandre AMJJ Bonvin

This dataset is the result of the benchmarking done in the publication MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing in which HADDOCK's coarse-grain support is extended to Protein-DNA docking.

It contains both the All-atom and Coarse-Grained output of 46 macromolecular complexes derived from the Protein-DNA benchmark (10.1093/nar/gkn386) as well as 6 complexes with experimental information, CAPRI Target 95 (PRC1 ubiquitination module bound to the nucleosome) and all new parameters added to HADDOCK.

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