Published July 14, 2020 | Version 1.0
Other Open

Analysis pipeline for "The impact of sex on gene expression across human tissues"

Creators

  • 1. Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA; Institute for Genomics and Systems Biology, The University of Chicago, Chicago, IL, USA; Department of Public Health Sciences, The University of Chicago, Chicago, IL, USA
  • 2. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Barcelona, Catalonia, Spain; Department of Statistics and Operations Research, Universitat Politècnica de Catalunya (UPC), Barcelona, Catalonia, Spain
  • 3. Statistical Genetics, Max Planck Institute of Psychiatry, Munich, Germany; New York Genome Center, New York, NY, USA; Department of Systems Biology, Columbia University, New York, NY, USA
  • 4. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Barcelona, Catalonia, Spain
  • 5. Department of Computer Science, Center for Statistics and Machine Learning, Princeton University, Princeton, NJ, USA
  • 6. Department of Genetics, Stanford University, Stanford, CA, USA
  • 7. Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA
  • 8. New York Genome Center, New York, NY, USA; Department of Systems Biology, Columbia University, New York, NY, USA
  • 9. Department of Computational Medicine, University of California, Los Angeles, CA, USA
  • 10. Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland
  • 11. Department of Integrative Structural and Computational Biology, The Scripps Research Institute, Scripps Research Translational Institute, La Jolla, CA, USA
  • 12. The Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
  • 13. Department of Statistics, The University of Chicago, Chicago, IL, USA
  • 14. Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA; Computational Sciences, Janssen Pharmaceuticals, Spring House, PA, USA
  • 15. Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA; Institute for Genomics and Systems Biology, The University of Chicago, Chicago, IL, USA; Center for Translational Data Science, The University of Chicago, Chicago, IL, USA; Department of Pathology and Laboratory Medicine, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA
  • 16. Department of Genetics, Microbiology and Statistics, Faculty of Biology, University of Barcelona. Barcelona, Spain
  • 17. University of Dundee, Dundee, Scotland, UK
  • 18. Division of Genetic Medicine, Vanderbilt University Medical Center, Nashville, TN, USA
  • 19. Division of Genetic Medicine, Vanderbilt University Medical Center, Nashville, TN, USA; Clare Hall, University of Cambridge, Cambridge, England, UK
  • 20. Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
  • 21. Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA
  • 22. The Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA; Massachusetts Eye and Ear, Harvard Medical School, Boston, MA, USA
  • 23. Genomics of Complex Diseases Group. Research Institute Hospital de la Sant Creu i Sant Pau. IIB Sant Pau. Barcelona, Spain
  • 24. Genomics of Complex Diseases Group. Research Institute Hospital de la Sant Creu i Sant Pau. IIB Sant Pau. Barcelona, Spain.
  • 25. Department of Public Health Sciences, The University of Chicago, Chicago, IL, USA
  • 26. Department of Statistics, The University of Chicago, Chicago, IL, USA; Department of Human Genetics, The University of Chicago, Chicago, IL, USA
  • 27. Departments of Computational Medicine, Computer Science, and Human Genetics, University of California, Los Angeles, CA, USA
  • 28. Department of Genetics, Stanford University, Stanford, CA, USA; Department of Pathology, Stanford University, Stanford, CA, USA
  • 29. Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA
  • 30. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Barcelona, Catalonia, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain
  • 31. Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA; Institute for Genomics and Systems Biology, The University of Chicago, Chicago, IL, USA; Center for Translational Data Science, The University of Chicago, Chicago, IL, USA; Center for Genetic Medicine, Department of Pharmacology, Northwestern University, Chicago, IL USA

Description

Sex-biased gene expression analysis pipeline for the research publication "The impact of sex on gene expression across human tissues". Details on how to set up and run the pipeline are available on the README.md file.

Files

sexde_pipeline.zip

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