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Open Tree of Life Synthetic Tree

OpenTreeOfLife; Benjamin Redelings; Luna Luisa Sanchez Reyes; Karen A. Cranston; Jim Allman; Mark T. Holder; Emily Jane McTavish

Open Tree of Life aims to construct a comprehensive, dynamic and digitally-available tree of life by synthesizing published phylogenetic trees along with taxonomic data.

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  • Redelings BD, Holder MT. "A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species." PeerJ. 2017;5:e3058. https://doi.org/10.7717/peerj.3058

  • Rees J, Cranston K (2017) "Automated assembly of a reference taxonomy for phylogenetic data synthesis." Biodiversity Data Journal 5: e12581. https://doi.org/10.3897/BDJ.5.e12581

  • McTavish EJ, Hinchliff CE, Allman JF, Brown JW, Cranston KA, Holder MT, et al. Phylesystem: a git-based data store for community curated phylogenetic estimates. Bioinformatics. 2015;31:2794–800. https://doi.org/10.1093/bioinformatics/btv276

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