Published August 5, 2019 | Version v1
Dataset Open

Automated identification of the mouse brain's spatial compartments from in situ sequencing data

Authors/Creators

  • 1. Uppsala university

Description

Example data [1] for testing in situ sequencing graph-based decoding pipeline and decoding results for reproducing publication analyses. Image decoding pipeline and notebooks are available at: https://github.com/wahlby-lab/graph-iss

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[1] Ke, Rongqin, et al. "In situ sequencing for RNA analysis in preserved tissue and cells." Nature methods 10.9 (2013): 857.

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Additional details

Funding

European Commission
TissueMaps - Integrating spatial and genetic information via automated image analysis and interactive visualization of tissue data 682810