Dataset Open Access

Bias Away - Background sequence repositories

Anthony Mathelier; Aziz Khan; Rafael Riudavets Puig; Paul Boddie

This repository contains all Background Sequences available for the following modules of our BiasAway web interface:

  • Mononucleotide distribution matched (subcommand g in the command-line tool).
  • Mononucleotide distribution within a sliding window (subcommand c in the command-line tool).

For every organism, we provide background sequences with the following lengths: 100bp, 250bp, 500bp, 750bp and 1000bp. The genome assemblies used were:

  • Homo sapiens: hg38.
  • Mus musculus: mm10.
  • Rattus norvegicus: Rnor_6.0.
  • Arabidopsis thaliana: TAIR10.
  • Danio rerio: GRCz11.
  • Drosophila melanogaster: dm6.
  • Caenorhabditis elegans: WBcel235.
  • Saccharomyces cerevisiae: R64-1-1.
  • Schizosaccharomyces pombe: ASM294v2.

The code and necessary documentation to generate them can be found at our BitBucket repository.

The documentation for the BiasAway tool can be found at readthedocs.

Files (16.7 GB)
Name Size
ASM294v2_1000bp.tar.gz
md5:ab50ac03f3a23e927b69042abaefdbaa 		4.0 MB Download
ASM294v2_100bp.tar.gz
md5:bb0ed5ebc36330bbda2991d918660d75 		4.5 MB Download
ASM294v2_250bp.tar.gz
md5:b19349afb7f27d901f37ec61c88c4879 		4.2 MB Download
ASM294v2_500bp.tar.gz
md5:ea97884fed90aaed75cc9ba9aa93b792 		4.1 MB Download
ASM294v2_750bp.tar.gz
md5:7a210e1c23ad1cbfd59b5037df603bfe 		4.0 MB Download
dm6_1000bp.tar.gz
md5:cf116f6d0fb0f7dbc585713fdea984e7 		44.6 MB Download
dm6_100bp.tar.gz
md5:09730322f9820326643d21ec3e6138a8 		50.9 MB Download
dm6_250bp.tar.gz
md5:37c3f9dc1bfa1189e4526aa2000d6039 		47.3 MB Download
dm6_500bp.tar.gz
md5:fe8b6b99e9f8313f802db7937a1c35c1 		45.6 MB Download
dm6_750bp.tar.gz
md5:98a7b4242e7344c9c33900b4effec947 		45.0 MB Download
GRCz11_1000bp.tar.gz
md5:5a7cad68b8cefb263a95eab00f36d80e 		411.7 MB Download
GRCz11_100bp.tar.gz
md5:4be430dde550b8c44ea40a86be4980f0 		470.5 MB Download
GRCz11_250bp.tar.gz
md5:2769f09879fb86f5d6b0315b3638a64f 		436.0 MB Download
GRCz11_500bp.tar.gz
md5:a591cc1af6ea9266977da884b7e612b5 		420.2 MB Download
GRCz11_750bp.tar.gz
md5:9232def3276d4f9528a638957dcc03ea 		415.5 MB Download
hg38_1000bp.tar.gz
md5:9a9cf4f08660d99c7379b58297300d96 		959.6 MB Download
hg38_100bp.tar.gz
md5:fd1a17eff475b899da444816d1e03604 		1.1 GB Download
hg38_250bp.tar.gz
md5:f965d8c3c7419943aa0bcb73633b28d2 		1.0 GB Download
hg38_500bp.tar.gz
md5:2cf3794f757e6a5417079677a796240e 		978.1 MB Download
hg38_750bp.tar.gz
md5:39b0b281c0b931f219547a1ae64cec2c 		968.0 MB Download
mm10_1000bp.tar.gz
md5:f4d57bce2493705b2f8869349660995b 		873.6 MB Download
mm10_100bp.tar.gz
md5:765d826bf4891f45b344efb7748fe174 		993.3 MB Download
mm10_250bp.tar.gz
md5:823745f22bb6535fb4b32683fb959da1 		922.1 MB Download
mm10_500bp.tar.gz
md5:013d5fca28d346c01e4bc5c921317616 		890.0 MB Download
mm10_750bp.tar.gz
md5:48fc0d2292a2255f955d612d774dbbab 		880.8 MB Download
R64-1-1_1000bp.tar.gz
md5:89a5ced7c62792220413f4b69e5dcfc0 		3.9 MB Download
R64-1-1_100bp.tar.gz
md5:f90cbb3aa7a63c0d5b221b8365285a22 		4.4 MB Download
R64-1-1_250bp.tar.gz
md5:7baac9ae80a1e190804a115da948166e 		4.1 MB Download
R64-1-1_500bp.tar.gz
md5:25422a1fbf453e57333cb3057fd50f73 		3.9 MB Download
R64-1-1_750bp.tar.gz
md5:7bd3c4888e34d6d8e4c22d57f13b7f03 		3.9 MB Download
Rnor_6.0_1000bp.tar.gz
md5:1de549289fc56a62c518e1a5341095f4 		824.4 MB Download
Rnor_6.0_100bp.tar.gz
md5:043cafbe7fbd04b57ba47bd643b82a9e 		943.5 MB Download
Rnor_6.0_250bp.tar.gz
md5:eadb1283c0dff4e3acf5a39453b009bb 		872.7 MB Download
Rnor_6.0_500bp.tar.gz
md5:18312a3b9a98f7841b0fa59587b1aef6 		841.0 MB Download
Rnor_6.0_750bp.tar.gz
md5:1aad80b05c987be35ed69d7e0b95fa12 		831.7 MB Download
TAIR10_1000bp.tar.gz
md5:54392a65a811f601d63bb23241501651 		37.4 MB Download
TAIR10_100bp.tar.gz
md5:5f1b9e743a5c4e9e934ba12996b267d2 		42.5 MB Download
TAIR10_250bp.tar.gz
md5:53124f56003d5d6aaae3755b49f1ab27 		39.5 MB Download
TAIR10_500bp.tar.gz
md5:5e547fc2ed2c419bde04a6de01842dc9 		38.1 MB Download
TAIR10_750bp.tar.gz
md5:82e3f9e36a196e16814266c7372f46da 		37.7 MB Download
WBcel235_1000bp.tar.gz
md5:1c3f0ddcdde24d2bbee1a4860fb243c9 		31.1 MB Download
WBcel235_100bp.tar.gz
md5:792475b5b6e99c21d72164f8b64c250a 		35.5 MB Download
WBcel235_250bp.tar.gz
md5:8a285b7e85526859d62e4bbc3a51e540 		32.9 MB Download
WBcel235_500bp.tar.gz
md5:69474bdbafc5163a4531558ada265739 		31.8 MB Download
WBcel235_750bp.tar.gz
md5:0492e1ba50b62c042a61f3061b486ba0 		31.4 MB Download
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Publication date:
June 30, 2020
DOI:
10.5281/zenodo.3923866

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