Published June 30, 2020
| Version v1
Dataset
Open
Bias Away - Background sequence repositories
- 1. Center for Molecular Medicine Norway, University of Oslo
- 2. Stanford University
Description
This repository contains all Background Sequences available for the following modules of our BiasAway web interface:
- Mononucleotide distribution matched (subcommand g in the command-line tool).
- Mononucleotide distribution within a sliding window (subcommand c in the command-line tool).
For every organism, we provide background sequences with the following lengths: 100bp, 250bp, 500bp, 750bp and 1000bp. The genome assemblies used were:
- Homo sapiens: hg38.
- Mus musculus: mm10.
- Rattus norvegicus: Rnor_6.0.
- Arabidopsis thaliana: TAIR10.
- Danio rerio: GRCz11.
- Drosophila melanogaster: dm6.
- Caenorhabditis elegans: WBcel235.
- Saccharomyces cerevisiae: R64-1-1.
- Schizosaccharomyces pombe: ASM294v2.
The code and necessary documentation to generate them can be found at our BitBucket repository.
The documentation for the BiasAway tool can be found at readthedocs.
Files
Files
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