Fungal and Oomycete cardinal temperatures (the Togashi dataset)

The Togashi Dataset
Cardinal temperature data sourced from K. Togashi. Biological Characters of Plant Pathogen Temperature Relations (Meibundo, Tokyo, 1949)

Metadata

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CLASS - Classification.
Fungi or oomycete.

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SPECIES_FINAL - Final species name.
Species name used in analyses presented in Chaloner et al., 2020 'Geometry and evolution of the ecological niche in plant-associated microbes'. See Methods section of Chaloner et al., (2020) for further details of how species names were determined.

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STRAIN - Strain.
Strain recorded in Togashi (1949).

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SOURCE_FINAL - Species name source database.
Source used to verify final species name. SF = Index Fungorum (www.indexfungorum.org) and Species Fungorum (www.speciesfungorum.org). MB = Mycobank (www.mycobank.org). LEG = Legitimate, ILL = Illegitimate (Mycobank).

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AUTHOR_FINAL - Species name author(s).
Authorship names for final species extracted from SF or MB (see 'Species name - source').

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NONSYNOM_REM - Nonsynonymous species data removed (where possible).
If it were possible to remove any nonsynonymous data associated with a particular species record in Togashi (1949), this column is recorded as 'Y'. See Methods section of Chaloner et al., (2020) for further details of how species names were determined.

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NONSYNOM_ALT - Species recorded 'as X' under nonsynonymous species record in Togashi (1949).
If it were possible to extract nonsynonymous data from one species record and record under an alternative species name, the species name attributed with this specific data is recorded here. For example, a subset of cardinal temperature data recorded under Fusarium javanicum in Togashi, (1949) was described 'as theobromae'. Fusarium theobromae was a synonym recorded under F. javanicum in Togashi, (1949), that was nonsynonymous once processed using relevant sources detailed above. Hence, data described 'as theobromae' were extracted and recorded as F. theobromae (final species name = Neocosmospora theobromae). Hence, the relevant cell in this column would be 'as theobromae'. See Methods section of Chaloner et al., (2020) for further details of how species names were determined.

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NONSYNOM_REC - Species record data were extracted from.
If it were possible to extract nonsynonymous data from one species record and record under an alternative species name, this column refers to the nonsynonymous species record that data were extracted from. From the above example, the relevant cell in this column would be 'Fusarium javanicum'. See Methods section of Chaloner et al., (2020) for further details of how species names were determined.

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SPECIES_TOGASHI     - Species name in Togashi (1949).
Species name recorded in Togashi (1949). Note, if spelling of a species name was corrected because it likely contained a spelling error in Togashi (1949), the original spelling of the species name is found in column SPECIES_TOGASHI_ALT.

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AUTHOR_TOGASHI - Species name - author(s) in Togashi (1949).
Authorship names for species names recorded in Togashi (1949), as per that provided in Togashi, (1949).

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SOURCE_VERIFICATION - Species name verification source.
Source used to verify species names recorded in Togashi (1949). SF = Index Fungorum and associated Species Fungorum databases. MB = Mycobank database. LEG = Legitimate, ILL = Illegitimate (Mycobank).

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AUTHOR_VERIFICATION - Author(s) from verification source.
Authorship names for species names recorded in Togashi (1949), as per source provided in SOURCE_VERIFICATION.

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SPECIES_TOGASHI_ALT - Species alternative spelling in Togashi (1949).
Original spelling of species name in Togashi (1949) if corrected in this database due to likely containing a spelling error.

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SPECIES_TOGASHI_NON - Nonsynonymous species names used in Togashi (1949)
Nonsynonymous species names recorded in Togashi (1949).

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TITLE_INFO - Information provided in titles of publications used by Togashi (1949) to extract cardinal temperature data.
Information provided in the titles of publications used to extract cardinal temperature data were used to determine if species name could be identified. Information not thought to be directly relevant to clarifying nonsynonymous species relationships has been omitted, unless otherwise clarified in column 'TITLE_MATCH'.

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TITLE_MATCH - Do species in source titles match species in Togashi (1949).
Whether the information provided in publication titles matched any synonymous or nonsynonymous species names provided by Togashi (1949).

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SPECIES_CHANGED    - Species name changed.
Depending on information detailed in 'SPECIES_TOGASHI', 'SPECIES_TOGASHI_NON', 'TITLE_INFO', and 'TITLE_MATCH', this column provides information on whether the final species name was updated based on species name information provided in publication references for cardinal temperature data.

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AMBIGUOUS - Recorded deleted in subset analysis due to ambiguity.
'Y' indicates data removed for ambiguous species subset data analysis detailed in Chaloner et al., 2020.

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SPORE - Spore type.
Spore type or otherwise recorded in Togashi (1949).

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PROCESS - Biological process.
Biological process recorded in Togashi (1949).

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CARDINAL - Cardinal temperature.
The type of cardinal temperature, i.e. minimum (min), optimum (opt), or maximum (max).

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TEMPERATURE - Temperature in degrees Celsius.

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DETAILS - Additional details.
Details associated with cardinal temperature data extracted from Togashi (1949). Where cardinal temperature data were estimated from prose in Togashi (1949), relevant information is provided here.

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UNCERTAINTY - Uncertainty in temperature values.
'>' and '<' indicate data modified by +/- 2.5 Celsius in analyses exploring the influence of uncertainty in reported cardinal temperatures. See Methods section of Chaloner et al., (2020) for further details.

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TEMPERATURE_REFERENCE - Cardinal temperature reference.
Publication reference for cardinal temperature data extracted by Togashi (1949).

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DISEASE - Name of plant disease caused by pathogen.

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HOST_PLANT - Name of host on which pathogen observed.

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METADATA ENDS

Funding provided by: BBSRC*
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100000268
Award Number: BB/N020847/1

Funding provided by: BBSRC
Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100000268
Award Number: BB/N020847/1