nipy/nipype: 1.5.0

Esteban, Oscar; Markiewicz, Christopher J.; Burns, Christopher; Goncalves, Mathias; Jarecka, Dorota; Ziegler, Erik; Berleant, Shoshana; Ellis, David Gage; Pinsard, Basile; Madison, Cindee; Waskom, Michael; Notter, Michael Philipp; Clark, Daniel; Manhães-Savio, Alexandre; Clark, Dav; Jordan, Kesshi; Dayan, Michael; Halchenko, Yaroslav O.; Loney, Fred; Salo, Taylor; Dewey, Blake E; Johnson, Hans; Bougacha, Salma; Keshavan, Anisha; Yvernault, Benjamin; Hamalainen, Carlo; Ćirić , Rastko; Christian, Horea; Dubois, Mathieu; Joseph, Michael; Cipollini, Ben; Tilley II, Steven; Visconti di Oleggio Castello, Matteo; Wong, Jason; De La Vega, Alejandro; Kaczmarzyk, Jakub; Huntenburg, Julia M.; Clark, Michael G.; Benderoff, Erin; Erickson, Drew; Kent, James D.; Hanke, Michael; Giavasis, Steven; Moloney, Brendan; Nichols, B. Nolan; Tungaraza, Rosalia; Frohlich, Caroline; Wassermann, Demian; de Hollander, Gilles; Eshaghi, Arman; Millman, Jarrod; Nielson, Dylan M.; Varoquaux, Gael; Watanabe, Aimi; Mordom, David; Mancini, Matteo; Guillon, Jérémy; Koudoro, Serge; Chetverikov, Andrey; Rokem, Ariel; Acland, Benjamin; Forbes, Jessica; Markello, Ross; Gillman, Ashley; Kong, Xiang-Zhen; Geisler, Daniel; Salvatore, John; Gramfort, Alexandre; Doll, Anna; Buchanan, Colin; DuPre, Elizabeth; Liu, Siqi; Schaefer, Alexander; Kleesiek, Jens; Sikka, Sharad; Schwartz, Yannick; Lee, John A.; Mattfeld, Aaron; Richie-Halford, Adam; Liem, Franz; Perez-Guevara, Martin Felipe; Heinsfeld, Anibal Sólon; Haselgrove, Christian; Durnez, Joke; Lampe, Leonie; Poldrack, Russell; Glatard, Tristan; Tabas, Alejandro; Cumba, Chad; Pérez-García, Fernando; Blair, Ross; Iqbal, Shariq; Welch, David; Triplett, William; Ghayoor, Ali; Craddock, R. Cameron; Correa, Carlos; Papadopoulos Orfanos, Dimitri; Stadler, Jörg; Warner, Joshua; Sisk, Lucinda M.; Falkiewicz, Marcel; Sharp, Paul; Rothmei, Simon; Kim, Sin; Weinstein, Alejandro; Kahn, Ari E.; Kastman, Erik; Bottenhorn, Katherine; Grignard, Martin; Perkins, L. Nathan; Contier, Oliver; Zhou, Dale; Bielievtsov, Dmytro; Cooper, Gavin; Stojic, Hrvoje; Linkersdörfer, Janosch; Waller, Lea; Renfro, Mandy; Hinds, Oliver; Stanley, Olivia; Küttner, René; Pauli, Wolfgang M.; Glen, Daniel; Kimbler, Adam; Meyers, Benjamin; Tarbert, Claire; Ginsburg, Daniel; Haehn, Daniel; Margulies, Daniel S.; Ma, Feilong; Malone, Ian B.; Snoek, Lukas; Brett, Matthew; Cieslak, Matthew; Hallquist, Michael; Molina-Romero, Miguel; Bilgel, Murat; Lee, Nat; Inati, Souheil; Gerhard, Stephan; Mathotaarachchi, Sulantha; Saase, Victor; Van, Andrew; Steele, Christopher John; Ort, Eduard; Condamine, Eric; Lerma-Usabiaga, Garikoitz; Schwabacher, Isaac; Arias, Jaime; Lai, Jeff; Pellman, John; Huguet, Jordi; Junhao WEN; Leinweber, Katrin; Chawla, Kshitij; Weninger, Leon; Modat, Marc; Harms, Robbert; Andberg, Sami Kristian; Baratz, Zvi; Matsubara, K; González Orozco, Abel A.; Marina, Ana; Davison, Andrew; Floren, Andrew; Park, Anne; Cheung, Brian; McDermottroe, Conor; McNamee, Daniel; Shachnev, Dmitry; Flandin, Guillaume; Gonzalez, Ivan; Varada, Jan; Schlamp, Kai; Podranski, Kornelius; Huang, Lijie; Noel, Maxime; Crusoe, Michael R.; Pannetier, Nicolas; Khanuja, Ranjeet; Urchs, Sebastian; Nickson, Thomas; Huang, Lijie; Broderick, William; Tambini, Arielle; Mihai, Paul Glad; Gorgolewski, Krzysztof J.; Ghosh, Satrajit

doi:10.5281/zenodo.3874968

Published June 3, 2020 | Version 1.5.0

Software Open

nipy/nipype: 1.5.0

1. Department of Psychology, Stanford University
2. Stanford University
3. MIT
4. Independent
5. The University of Iowa
6. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
7. Developer
8. Klinikum rechts der Isar, TUM. ACPySS
9. UC Berkeley
10. University of California, San Francisco
11. Mayo Clinic, Neurology, Rochester, MN, USA
12. Dartmouth College: Hanover, NH, United States
13. Florida International University
14. Department of Electrical and Computer Engineering, Johns Hopkins University
15. University of Iowa
16. Molecular Imaging Research Center, CEA, France
17. UC Berkeley - UCSF Graduate Program in Bioengineering
18. Institute for Biomedical Engineering, ETH and University of Zurich
19. The Centre for Addiction and Mental Health
20. UC San Diego
21. Holland Bloorview Kids Rehabilitation Hospital
22. Dartmouth College
23. Shattuck Lab, UCLA Brain Mapping Center
24. University of Texas at Austin
25. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
26. National Institutes of Health
27. Concordia University
28. Neuroscience Program, University of Iowa
29. Otto-von-Guericke-University Magdeburg, Germany
30. Child Mind Institute
31. SRI International
32. Athena EPI, Inria Sophia-Antipolis
33. Vrije Universiteit, Amsterdam
34. University College London
35. National Institute of Mental Health
36. INRIA
37. ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.
38. Indiana University, IN, USA
39. Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging
40. The University of Washington eScience Institute
41. Washington University in St Louis
42. Montreal Neurological Institute and Hospital
43. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
44. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
45. Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany
46. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
47. Department of Psychology, University of Bielefeld, Bielefeld, Germany.
48. The University of Sydney
49. National University Singapore
50. UniversityHospital Heidelberg, Germany
51. Nathan s Kline institute for psychiatric research
52. NIMH IRP
53. University of Washington
54. University of Zurich
55. Neurospin/Unicog/Inserm/CEA
56. Department of Psychology, Stanford University; Parietal, INRIA
57. MPI CBS Leipzig, Germany
58. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
59. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
60. Duke University
61. CEA
62. Leibniz Institute for Neurobiology
63. Mayo Clinic
64. Yale University; New Haven, CT, United States
65. University of Illinois Urbana Champaign
66. Korea Advanced Institute of Science and Technology
67. University of Pennsylvania
68. Harvard University - Psychology
69. GIGA Institute
70. Boston University
71. University of Newcastle, Australia
72. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
73. German Institute for International Educational Research
74. Charite Universitatsmedizin Berlin, Germany
75. Dept of Medical Biophysics, Univeristy of Western Ontario
76. California Institute of Technology
77. NIMH, Scientific and Statistical Computing Core
78. University of Pittsburgh
79. Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
80. University of Amsterdam
81. Department of Neuropsychiatry, University of Pennsylvania
82. Technical University Munich
83. National Institute on Aging, Baltimore, MD, USA
84. Institute of Neuroinformatics, ETH/University of Zurich
85. Enigma Biomedical Group
86. MPI-CBS; McGill University
87. Vrije Universiteit Amsterdam
88. CNRS, UMS3552 IRMaGe
89. Child Mind Institute / Nathan Kline Institute
90. BarcelonaBeta Brain Research Center
91. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
92. INRIA-Saclay, Team Parietal
93. Institute of Imaging & Computer Vision, RWTH Aachen University, Germany
94. University of Helsinki
95. Sagol School of Neuroscience, Tel Aviv University
96. Universidad de Guadalajara
97. The University of Texas at Austin
98. University of Cambridge
99. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
100. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
101. Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.
102. MIT, HMS

1.5.0 (June 03, 2020)

New feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package: niflow-nipype1-examples.

(Full changelog)

FIX: volterra_expansion_order documentation error (https://github.com/nipy/nipype/pull/3213)
FIX: BET incorrect output paths (https://github.com/nipy/nipype/pull/3214)
FIX: Terminal output in report.rst spreads one line per character (https://github.com/nipy/nipype/pull/3220)
FIX: Allow parsing freesurfer 7 version string (https://github.com/nipy/nipype/pull/3216)
FIX: Use PackageInfo to get NiftyReg version (https://github.com/nipy/nipype/pull/3194)
FIX: Partial rollback of N4BiasFieldCorrection (https://github.com/nipy/nipype/pull/3188)
FIX: ANTs' tools maintenance overhaul (https://github.com/nipy/nipype/pull/3180)
FIX: load_resultfile crashes if open resultsfile from crashed job (https://github.com/nipy/nipype/pull/3182)
FIX: FSL model.py make multiple F-tests (https://github.com/nipy/nipype/pull/3166)
ENH: Restore ants.legacy interfaces (https://github.com/nipy/nipype/pull/3222)
ENH: Add "TruncateImageIntensity" operation to ants.utils.Image.Math (https://github.com/nipy/nipype/pull/3210)
ENH: SPM NewSegment multi-channel segmentation (https://github.com/nipy/nipype/pull/3162)
ENH: Add reverse-ordered transform lists to ants.Registration outputs (https://github.com/nipy/nipype/pull/3192)
ENH: Improve workflow connect performance (https://github.com/nipy/nipype/pull/3184)
ENH: Add ConstrainedSphericalDeconvolution interface to replace EstimateFOD for MRtrix3's dwi2fod (https://github.com/nipy/nipype/pull/3176)
ENH: Detect values for EulerNumber interface (https://github.com/nipy/nipype/pull/3173)
ENH: Remove examples from repository (https://github.com/nipy/nipype/pull/3172)
TEST: Clean up tests (https://github.com/nipy/nipype/pull/3195)
TEST: Mock terminal output before testing changing default value (https://github.com/nipy/nipype/pull/3193)
REF: make invocations of python and pytest consistent with the one used/desired python (https://github.com/nipy/nipype/pull/3208)
REF: Prefer math.gcd to hand-rolled Euclid's algorithm (https://github.com/nipy/nipype/pull/3177)
REF: Removed all uses of numpy_mmap (https://github.com/nipy/nipype/pull/3121)
DOC: Sphinx 3 compatibility (https://github.com/nipy/nipype/pull/3206)
DOC: Update links, typos in contributing guide (https://github.com/nipy/nipype/pull/3160)
DOC: Update SelectFiles docstring to match actual behavior (https://github.com/nipy/nipype/pull/3041)
DOC: Updated .zenodo.json file (https://github.com/nipy/nipype/pull/3167)
DOC: Update .zenodo.json (https://github.com/nipy/nipype/pull/3165)
MNT: Permit recent nilearns (https://github.com/nipy/nipype/pull/2841)
MNT: Test Python 3.8 (https://github.com/nipy/nipype/pull/3154)
MNT: Restore ReadTheDocs (https://github.com/nipy/nipype/pull/3207)
MNT: Update Zenodo ordering based on commit count (https://github.com/nipy/nipype/pull/3169)

Files

nipy/nipype-1.5.0.zip

Files (3.6 MB)

Name	Size	Download all
nipy/nipype-1.5.0.zip md5:22a5f55f285a415995447be795809cdc	3.6 MB	Preview Download

Additional details

Is supplement to: https://github.com/nipy/nipype/tree/1.5.0 (URL)

	All versions	This version
Views	32,801	540
Downloads	3,759	72
Data volume	15.7 GB	256.0 MB

nipy/nipype: 1.5.0

Authors/Creators

Description

Files

nipy/nipype-1.5.0.zip

Files (3.6 MB)

Additional details

Related works