Besca example data repository
Published May 28, 2020 | Version 1.0
Dataset Open

Martin2019 GSE134809 Ileal Crohn's dataset for besca

Authors/Creators

  • 1. Roche Pharma Research and Early Development

Description

The gene expression matrix was downloaded from GEO (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134809), originally published by Martin JC, Chang C, Boschetti G, et al. Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy. Cell. 2019;178(6):1493‐1508.e20. doi:10.1016/j.cell.2019.08.008. We reprocessed the dataset using the Besca package (https://github.com/bedapub/besca).

Files

Files (1.7 GB)

Name Size
md5:5d37e4d5d9b50d21fc301a7725507e2c
970.5 MB Download
md5:b39c1e007e65a6439fa77f5e768f7f24
714.4 MB Download

Additional details

References

  • Martin JC, Chang C, Boschetti G, et al. Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy. Cell. 2019;178(6):1493‐1508.e20. doi:10.1016/j.cell.2019.08.008