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Published September 14, 2017 | Version v0.9
Software Open

ImcSegmentationPipeline: A pixelclassification based multiplexed image segmentation pipeline

Authors/Creators

  • 1. University of Zurich

Description

This repository demonstrate and documents how the packages imctools, CellProfiler and Ilastik can be combined to segment highly multiplexed imaging mass cytometry images into regions corresponding to single cell slices.

Files

BodenmillerGroup/ImcSegmentationPipeline-v0.9.zip

Files (5.8 MB)

Additional details

Related works

Is supplement to
https://github.com/BodenmillerGroup/ImcSegmentationPipeline/tree/v0.9 (URL)