TRAIL signalling promotes entosis in colorectal cancer
Authors/Creators
- 1. Department of Physiology and Medical Physics, Centre for Systems Medicine, Royal College of Surgeons in Ireland, 123 St. Stephen's Green, Dublin 2, Ireland; Department of Genetics and Bioengineering, Faculty of Engineering, Izmir University of Economics, Balcova, Izmir, Turkey;
- 2. Department of Physiology and Medical Physics, Centre for Systems Medicine, Royal College of Surgeons in Ireland, 123 St. Stephen's Green, Dublin 2, Ireland;
- 3. Cellular and Molecular Imaging Core, Royal College of Surgeons in Ireland, D02 YN77 Dublin 2, Ireland;
- 4. Centre for Cancer Research and Cell Biology, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, 97 Lisburn Road, Belfast, BT9 7BL, UK
- 5. Molecular Cell Biology Laboratory, Department of Genetics, The Smurfit Institute, Trinity College, Dublin, Ireland;
Description
Datasets and source-code underlying the computational analyses investigating the clinical association among TRAIL signalling, cell-in-cell structures, and colorectal cancer included in the manuscript "TRAIL signalling promotes entosis in colorectal cancer" authored by Emir Bozkurt, Heiko Düssmann, Manuela Salvucci, Brenton L. Cavanagh, Sandra Van Schaeybroeck, Daniel B. Longley, Seamus J. Martin and Jochen H. M. Prehn (submitted 2020, biorxiv preprint).
A pre-built docker image is provided in "prebuilt_docker_image.tar.gz". Files generated by running the code (as described in the ReadMe), including "summary.pdf" (corresponding to Supplementary File 1 of the biorxiv submission), "processed_data/*" and "figures_and_tables" (figure and tables with statistical results) are also provided in "precomputed_files.zip". Additionally, data and code are available in a public BitBucket repository and as myBinder container.
Notes
Files
manuela_s-trail_signalling_promotes_entosis_in_colorectal_cancer-586855793258.zip
Additional details
Related works
- Is supplemented by
- https://bitbucket.org/manuela_s/trail_signalling_promotes_entosis_in_colorectal_cancer/src/master/ (URL)