HiC matrices from Sungalee et al. for lymphoma cell lines
Authors/Creators
- 1. Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences, Ecole Polytechnique Federale de Lausanne, Switzerland
- 2. Department of Computational Biology, University of Lausanne (UNIL), 1011 Lausanne, Switzerland
- 3. Division of Molecular Pathology, The Netherlands Cancer Institute, Amsterdam, The Netherlands
Description
Hi-C datasets generated in Sungalee et al. are provided as intra-chromosomal contact lists and matrices, divided by cell line/condition and chromosome.
The following lymphoma cell lines/conditions are available:
- WSU-DLCL2 (WSU_A485 treatment)
- Karpas-422 (Karpas422_A485 treatment)
Contact lists are provided as compressed plain-text files in which each row represents a Hi-C contact. Column fields are described below:
1) strand of read 1 (0=forward, 16=reverse)
2) chromosome of read 1
3) position on the chromosome where read 1 aligned
4) strand of read 2 (0=forward, 16=reverse)
5) chromosome of read 2
6) position on the chromosome where read 2 aligned
7) mapping quality of read 1
8) name of the read pair as seen in the FASTQ files
9) mapping quality of read 2
Files
Restricted
The record is publicly accessible, but files are restricted. Log in to check if you have access.
Request access
If you would like to request access to these files, please fill out the form below.
You need to satisfy these conditions in order for this request to be accepted:
Publication is being reviewed
You are currently not logged in. Do you have an account? Log in here