Published May 7, 2020
| Version v1
Dataset
Open
Subset of nucleosomal DNA sequences from mouse brain nucleus accumbens tissue (GEO dataset GSE54263)
Authors/Creators
- 1. Department of Human and Medical Genetics, Vilnius University
Description
This dataset contains a subset of nucleosomal DNA sequences of +1 nucleosomes from mouse brain nucleus accumbens cells (NAC) used to analyze nucleosome positioning sequence (NPS) patterns in Pranckeviciene, Erinija and Hosid, Sergey and Liang, Nathan and Ioshikhes, Ilya (2020). Nucleosome positioning sequence patterns as packing or regulatory. In PLoS computational biology, 16 (1), pp. e1007365.
- controlm.fa.gz contains sequences of control mice (GSE54263 subset Con_H3 GSM1311267)
- resilientm.fa.gz contains sequences of mice resilient to social stress (GSE54263 subset Res_H3 GSM1311268)
- susceptiblem.fa.gz contains sequences of mice susceptible to social stress (GSE54263 subset Sus_H3 GSM1311269)
This dataset originates from the GEO accession GSE54263 data from Sun H, Damez-Werno DM, Scobie KN, Shao NY et al. ACF chromatin-remodeling complex mediates stress-induced depressive-like behavior. Nat Med 2015 Oct;21(10):1146-53.
Files
Files
(16.8 MB)
| Name | Size | Download all |
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md5:7afabfc707d197b869d71f600747baf8
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5.9 MB | Download |
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md5:e7b01ae74eb25d9a9cd1fb11ded068ce
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5.5 MB | Download |
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md5:5d9766946b885c99c6a5416c22c83727
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5.4 MB | Download |
Additional details
References
- Pranckeviciene E, Hosid S, Liang N, Ioshikhes I (2020) Nucleosome positioning sequence patterns as packing or regulatory. PLoS Comput Biol 16(1): e1007365.