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Dataset Open Access

Data files to support reproducing analyses in "Overcoming bias in gene category enrichment analyses of brain-wide transcriptomic data"

Ben Fulcher

A repository of raw and processed data to accompany the manuscript, 'Overcoming bias in gene category enrichment analyses of brain-wide transcriptomic data'.

A description of how these files can be used to reproduce analyses is in the documentation for the code in this repository https://github.com/benfulcher/GCEA_FalsePositives

Files (13.9 GB)
Name Size
100DS360scaledRobustSigmoidNSGDSQC1Lcortex_ROI_NOdistCorrSurface.mat
md5:0a81e044c30d846bc1b8927583829755
174.3 MB Download
AllenGeneDataset_19419.mat
md5:230756c016d2732c5756e128335cdbb8
305.6 MB Download
CategorySpatialScoring_human-cortex.mat
md5:b21d65270a4b517d3eb2c9dc913aa78e
908.1 kB Download
CategorySpatialScoring_mouse-all.mat
md5:0daffbcf24360f412da61473670a1530
968.5 kB Download
HCP_360_20.mat
md5:290def25d934d901ea66aabd7649c891
1.2 MB Download
human_HCP-cortex_Surrogate_N40000.mat
md5:80788ea7c3cc2998e99ed7da8c12d492
54.9 MB Download
Intra_human_geneShuffle_raw_20000.mat
md5:1db9090c9e126f3b64a60ef1334cd030
869.3 kB Download
Intra_mouse_geneShuffle_raw_20000.mat
md5:81f1b38a42b18afd94b131b2672c6949
1.1 MB Download
mouse_all_Surrogate_N40000.mat
md5:a03a3f54d5e6a094fe973855dafb06a3
66.2 MB Download
Mouse_Connectivity_Data.mat
md5:0eada8ff113b3707997e0f91ff398846
6.7 MB Download
mouse_cortex_Surrogate_N40000.mat
md5:822aa91c5a4dd0e76301cf4de45b2fa4
11.8 MB Download
PhenotypeNulls_40000_human-HCP-customEnsemble_Spearman_mean_.mat
md5:b816fb7d118226c24b551940f71a092b
1.6 GB Download
PhenotypeNulls_40000_human-HCP-randomMap_Spearman_mean_.mat
md5:6af1de96b50e05f78458cd9fc362a3e9
1.6 GB Download
PhenotypeNulls_40000_mouse-all-customEnsemble_Spearman_mean_.mat
md5:47b3905ff589146fa091b17a8f2780e7
1.7 GB Download
PhenotypeNulls_40000_mouse-all-randomMap_Spearman_mean_.mat
md5:d18ead072852d3f283870fb5cb846909
1.7 GB Download
PhenotypeNulls_40000_mouse-cortex-customEnsemble_Spearman_mean_.mat
md5:fdd23b9af454db8ab208586c9945a284
1.7 GB Download
PhenotypeNulls_40000_mouse-cortex-randomMap_Spearman_mean_.mat
md5:b50bd097f1d306521927a8ecaf570d55
1.7 GB Download
spatialACscores_human-cortex_stat.mat
md5:4b0439340349862a91afa59c8eb813c6
760.9 kB Download
spatialACscores_mouse-cortex_stat.mat
md5:47c7999ceb6856e351b42e374927dc22
813.2 kB Download
SupplementaryTables.zip
md5:944a61a6dd5d9e4a826b3c473cdf9465
4.0 MB Download
SurrogateGOTables_10000_human_randomMap_independentSpatialShuffle.mat
md5:d72200b351e8c6933c93b94ba09bfa28
563.6 MB Download
SurrogateGOTables_10000_human_randomMap_none.mat
md5:dadb973c23feec44cb6f9d9dc6d7fa1c
562.9 MB Download
SurrogateGOTables_10000_human_spatialLag_none.mat
md5:cfd24832b0db6e9375a39ace01ce1ae4
562.2 MB Download
SurrogateGOTables_10000_mouse_randomMap_independentSpatialShuffle.mat
md5:489c01e7be9d7124289776341ed0a4ee
595.7 MB Download
SurrogateGOTables_10000_mouse_randomMap_none.mat
md5:b0423121512f7af4c5781f2a4b181581
594.7 MB Download
SurrogateGOTables_10000_mouse_spatialLag_none.mat
md5:ef94c02e4e946ca552ce2a8be3066dcd
593.9 MB Download
  • Fulcher et al., Overcoming bias in gene-set enrichment analyses of brain-wide transcriptomic data. bioRxiv. https://doi.org/10.1101/2020.04.24.058958

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