ToxicoDB: an integrated database to mine and visualize large-scale toxicogenomic datasets
- 1. Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada
- 2. Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada , Department of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada
- 3. Department of Toxicogenomics, GROW School of Oncology and Development Biology, Maastricht University, Maastricht, The Netherlands
- 4. Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada Department of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada Department of Computer Science, University of Toronto, Toronto, ON M5T 3A1, Canada Ontario Institute for Cancer Research, Toronto, ON M5G 1L7, Canada Vector Institute for Artificial Intelligence, Toronto, ON M5G 1L7, Canada
Description
This page links to the data associated with the publication "ToxicoDB: an integrated database to mine and visualize large-scale toxicogenomic datasets ". The data have been curated and analyzed using our open-source R package, ToxicoGx (https://github.com/bhklab/ToxicoGx) and are available publicly in the ToxicoDB web application (www.toxicodb.ca). Please see the included DOIs below, or download the .csv file which contains the names, dates and DOIs of all datasets listed here.
The TGGATES data was generated by Igarashi Y, Nakatsu N, Yamashita T, Ono A, Ohno Y, Urushidani T, Yamada H. Open TG-GATEs: a large-scale toxicogenomics database. Nucleic Acids Res [Internet]. 2015 Jan;43(Database issue):D921–7. Available from: http://dx.doi.org/10.1093/nar/gku955 PMCID: PMC4384023.
Data:
- TGGATEs humanldh (https://doi.org/10.5281/zenodo.3762812)
- TGGATEs humandna (https://doi.org/10.5281/zenodo.4024859)
- TGGATEs ratldh (https://doi.org/10.5281/zenodo.3762817)
- TGGATEs ratdna (https://doi.org/10.5281/zenodo.4024918)
This Drug Matrix data was generated by Ganter B, Snyder RD, Halbert DN, Lee MD. Toxicogenomics in drug discovery and development: mechanistic analysis of compound/class-dependent effects using the DrugMatrix database. Pharmacogenomics [Internet]. 2006 Oct;7(7):1025–1044. Available from: http://dx.doi.org/10.2217/14622416.7.7.1025 PMID: 17054413.
Data:
- Drug Matrix (https://doi.org/10.5281/zenodo.3766569)
Notes
Files
availableTSets.csv
Files
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