Supplementary phylogenetic data for Rouïl et. al. 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals"
Authors/Creators
- 1. UMR 1062 Centre de Biologie pour la Gestion des Populations, INRAE, CIRAD, IRD, Montpellier SupAgro, Univ. Montpellier, Montpellier, France
- 2. Genoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, Évry Cedex, France
- 3. Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
Description
Supplementary phylogenetic data for Rouïl et. al. 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals"
The data set consists of the following sub-directories:
1) "APSE_conserved_proteins_alns": Single-copy conserved genes codon sequences and alignments in FASTA format.
2) "APSE_phylogeny": Files used for APSE phylogenetic and recombination analyses.
3) "APSE_reannotations": GenBank-formatted files of the assemblies and re-annotations of APSE phages. Newly-sequenced phages deposited at the European nucleotide Archive are also included. ***New in this version***
4) "APSE_toxin_lyzozyme": Files used for APSE toxin-cassette and lyzozyme-related gene phylogenies.
5) "Arsenophonus_PHASTER": PHASTER phage annotation output files organised by organisim and contig/scaffold.
6) "Hamiltonella_drafts": Newly-sequenced low-coverage draft Hamiltonella genomes in FASTA format.
7) "Hamiltonella_phylogeny": files used for Hamiltonella phylogenetic analysis.
See enclosed README.txt file for more details.
Notes
Files
Files
(4.0 MB)
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md5:fe496f1c2a6b13d11a9d3a5b11ca9cb5
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Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2020.03.17.996009 (DOI)
- Journal article: 10.1093/gbe/evaa089 (DOI)