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Dataset Open Access

Inspector Javert's Xref Database

Charles Tapley Hoyt

It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.

We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.

It was generated with the following code in the shell:

pip install git+https://github.com/pyobo/pyobo.git
obo javerts-xrefs

 

Files (9.3 MB)
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inspector_javerts_xref_summary.tsv
md5:c5f2ee6299887cfa88b440285c7096cb
6.7 kB Download
inspector_javerts_xrefs.tsv.gz
md5:d5fbf825e7dda6e74952ca0c06736d5a
9.3 MB Download
inspector_javerts_xrefs_sample.tsv
md5:fb62c24116e017c845e4a67e6c061a85
245 Bytes Download
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