Published December 31, 2016 | Version v1
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Geographical variation of Rhinolophus affinis (Chiroptera: Rhinolophidae) in the Sundaic subregion of Southeast Asia, including the Malay Peninsula, Borneo and Sumatra

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Ith, Saveng, Bumrungsri, Sara, Thomas, Nikky M., Bates, Paul J. J., Willette, Demian A., Khan, Faisal Ali Anwarali, Wonglapsuwan, Monwadee, Soisook, Pipat, Maryanto, Ibnu, Huang, Joe Chun- Chia, Furey, Neil M. (2016): Geographical variation of Rhinolophus affinis (Chiroptera: Rhinolophidae) in the Sundaic subregion of Southeast Asia, including the Malay Peninsula, Borneo and Sumatra. Acta Chiropterologica 18 (1): 141-161, DOI: 10.3161/15081109ACC2016.18.1.006

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References

  • ANDERSEN, K. 1907. Chiroptera notes. Annali del Museo Civico di Storia Naturale di Genova (3), 3: 5-45.
  • BARCLAY, R. M. R., J. H. FULLARD, and D. S. JACOBS. 1999. Variation in the echolocation calls of the hoary bat (Lasiurus cinereus): influence of body size, habitat structure, and geographical location. Canadian Journal of Zoology, 77: 530-534.
  • BATES, P. J. J., and D. L. HARRISON. 1997. Bats of Indian subcontinent. Harrison Zoological Museum, Sevenoaks, Kent, 258 pp.
  • BICKHAM, J. W., J. C. PATTON, D. A. SCHLITTER, I. L. RAUTEN- BACH, and R. L. HONEYCUTT. 2004. Molecular phylogenetics, karyotypic diversity, and partition of the genus Myotis (Chiroptera: Vespertilionidae). Molecular Phylogenetics and Evolution, 33: 333-338.
  • CORBET, G. B., and J. E. HILL. 1992. The mammals of the Indomalayan Region. Natural History Museum Publications, Oxford University Press, Oxford, 488 pp.
  • CSORBA, G., P. UJHELYI, and N. M. THOMAS. 2003. Horseshoe bats of the world (Chiroptera: Rhinolophidae). Alana Books, Bishops Castle, Shropshire, xxxii + 160 pp.
  • DARRIBA, D., G. L. TABOADA, R. DOALLO, and D. POSADA. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9: 772.
  • DE BRUYN, M., E. NUGROHO, M. M. HOSSAIN, J. C. WILSON, and P. B. MATHER. 2005. Phylogeography evidence for the existence of an ancient biogeographic barrier: the Isthmus of Kra of Kra Seaway. Heredity, 94: 370-378.
  • DRUMMOND, A. J., and A. RAMBAUT. 2007. BEAST: Baysian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7: 214.
  • FRANCIS, C. M. 2008. A field guide to the mammals of Thailand and South-East Asia. Books Co., Ltd., Bangkok, 392 pp.
  • FRANCIS, C. M., and J. HABERSETZER. 1998. Interspecific and intraspecific variation in echolocation call frequency and morphology of horseshoe bats, Rhinolophus and Hipposideros. Pp. 169-179, in Bat biology and conservation (T. H. KUNZ and P. A. RACEY, eds.). Smithsonian Institute Press, Washington, D.C., xiv + 365 pp.
  • FRANCIS, C. M., A. V. BORISSENKO, N. V. IVANOVA, J. L. EGER, B. K. LIM, A. GUILLEN- SERVENT, S. V. KRUSKOP, I. MACKIE, and P. D. N. HEBERT. 2010. The role of NDA barcodes in understanding and conservation of mammal diversity in Southeast Asia. PLoS ONE, 5: 1-12.
  • FUREY, N. M., V. D. THONG, P. J. J. BATES, and G. CSORBA. 2009. Description of a new species belonging to the Murina 'suilla -group' (Chiroptera: Vespertilionidae: Murininae) from north Vietnam. Acta Chiropterologica, 11: 225-236.
  • FURMAN, A., T. OZTUNC, T. POSTAWA, and E. CORAMAN. 2010. Shallow genetic differentation in Miniopterus schreibersii (Chiroptera: Vespertilionidae) indicates a relatively recentcolonization of Europe from a single glacial refugium. Acta Chiropterologica, 12: 51-59.
  • GANNON, W. L., R. S. SIKES, and THE ANIMAL CARE AND USE COMMITTEE OF THE AMERICAN SOCIETY OF MAMMALOGISTS. 2007. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy, 88: 809-823.
  • GATHORNE- HARDY, F. J., SYAUKANI, R. G. DAVIES, P. EGGLETON, and D. T. JONES. 2002. Quaternary rainforest refugia in south-east Asia: using termites (Isoptera) as indicators. Biological Journal of the Linnean Society, 75: 453-466. Vicariance or dispersal? Historical biogeography of three Sunda shelf murine rodents (Maxomys surifer, Leopoldamys sabanus and Maxomys whiteheadi). Biological Journal of the Linnean Society, 81: 91-109.
  • GUILLEN, A., J. B. JUSTE, and C. IBANEZ. 2000. Variation in the frequency of the echolocation calls of Hipposideros ruber in the Gulf of Guinea: an exploration of the adaptive meaning of the constant frequency value in rhinolophoid CF bats. Journal of Evolutionary Biology, 13: 70-80.
  • HEANEY, L. R. 1991. A synoptic climatic and vegetational change in Southeat Asia. Climatic Change, 19: 53-61.
  • HELLER, K.-G., and O. VON HELVERSEN. 1989. Resource partioning of sonar frequency bands in rhinolophid bats. Oecologia, 80: 178-186.
  • HUANG, J. C.-C., E. L. JAZDZYK, M. NUSALAWO, I. MARYANTO, MAHARADATUNKAMSI, S. WIANTORO, and T. KINGSTON. 2014. A recent bat survey reveals Bukit Barisan Selatan Landscape as a chiropteran diversity hotspot in Sumatra. Acta Chiropterologica, 16: 413-449.
  • HUELSENBECK, J. P., and F. RONQUIST. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17: 754-755.
  • HUGHES, A. C., C. SATASOOK, P. J. J. BATES, S. BUMRUNGSRI, and G. JONES. 2011. Explaining the casuses of the zoogeographic transition around the Isthmus of Kra: using bats as a case study. Journal of Biogeography, 38: 2362-2372.
  • HUGHES, J. B., P. D. ROUND, and D. S. WOODRUFF. 2003. The Indochinese-Sundaic faunal transition at the Isthmus of Kra: an analysis of resident forest bird species distributions. Journal of Biogeography, 30: 569-580.
  • INGER, R. F., and H. K. VORIS. 2001. The biogeographical relations of the frogs and nakes of Sundaland. Journal of Biogeography, 28: 863-891.
  • ITH, S., S. BUMRUNGSRI, N. M. FUREY, P. J. J. BATES, M. WONG- LAPSUWAN, F. A. A. KHAN, V. D. THONG, P. SOISOOK, C. SATASOOK, and N. M. THOMAS. 2015. Taxonomic implications of geographical variation in Rhinolophus affinis (Chiroptera: Rhinolophidae) in mainland Southeast Asia. Zoological Studies, 54: 31.
  • IVANOVA, N. V., E. L. CLARE, and A. V. BORISENKO. 2012. DNA barcoding in mammals. P. 485, in DNA barcodes: methods and protocols (W. J. KRESS and D. L. ERICKSON, eds.). Humana Press, New York, 485 pp.
  • KHAN, F. A. A., V. J. SWIER, P. A. LARSEN, S. SOLARI, K. BESAR, M. WAHAP, M. T. ABDULLAH, S. ELLAGUPILLAY, M. MAR- KLARIN, and R. J. BAKER. 2008. Using genetics and morphology to examine species diversity of Old World bats: report of a recent collection from Malaysia. Occasional Papers of the Museum of Texas Tech University, 281: 1-28.
  • KHAN, F. A. A., S. SOLARI, V. J. SWIER, P. A. LARSEN, M. T. ABDULLAH, and R. J. BAKER. 2010. Systematics of Malaysian woolly bats (Vespertilionidae: Kerivoula) inferred from mitochondrial, nuclear, karyotypic, and morphological data. Journal of Mammalogy, 91: 1058-1072.
  • KHAN, F. A. A., C. D. PHILLIPS, and R. J. BAKER. 2013. Timeframes of speciation, reticulation, and hybridization in the Bulldog Bat explained through phylogenetic analyses of all genetic transmission elements. Systematic Biology, 63: 96-110.
  • KINGSADA, P., B. DOUANGBOUBPHA, S. ITH, N. M. FUREY, P. S OISOOK, S. BUMRUNGSRI, C. SATASOOK, V. D. THONG, G. CSORBA, D. L. HARRISON, et al. 2011. A checklist of bats from Cambodia, including the first record of the intermediate horseshoe bat Rhinolophus affinis (Chiroptera: Rhinolophidae) with additional information from Thailand and Vietnam. Cambodian Journal of Natural History, 2011(1): 49-59.
  • KINGSTON, T., and S. J. ROSSISTER. 2004. Harmonic hopping in Wallacea's bats. Nature, 429: 654-657.
  • KINGSTON, T., G. JONES, A. ZUBAID, and T. H. KUNZ. 2000. Resource partitioning in rhinolophoid bats revisited. Oecologia, 124: 332-342.
  • KINGSTON, T., M. C. LARA, G. JONES, Z. AKBAR, T. H. KUNZ, and C. J. SCHNEIDER. 2001. Acoustic divergence in two cryptic Hipposideros species: a role for social selection? Proceedings of the Royal Society of London, 268B: 1381-1386.
  • KOOPMAN, K. F. 1994. Chiroptera: systematics. Pp. 1-217, in Handbook of zoology. Volume VIII, Part 60: Mammalia (J. NIETHAMMER, H. SCHLIEMANN, and D. STARCK, eds.). Walter de Gruyter, Berlin, vii + 224 pp.
  • KRUSKOP, S., and K. A. TSYTSULINA. 2001. A new big-footed mouse-eared bat Myotis annamiticus sp. nov. (Vespertilionidae, Chiroptera) from Vietnam. Mammalia, 65: 63-72.
  • LEKAGUL, B., and J. A. MCNEELY. 1988. Mammals of Thailand, 2nd edition. Association for the Conservation of Wildlife, Darnsutha, Bangkok, 758 pp.
  • LIN, A.-Q., G. CSORBA, L.-F. Li, T.-L. JIANG, G.-J. LU, V. D. THONG, P. SOISOOK, K.-P. SUN, and J. FENG. 2014. Phylogeography of Hipposideros armiger (Chiroptera: Hipposideridae) in the Oriental Region: the contribution of multiple Pleistocene glacial refugia and intrinsic factors to contemporary population genetic structure. Journal of Biogeography, 41: 317-327.
  • MAHARADATUNKAMSI, S. HISHEH, D. J. KITCHENER, and L. H. SCHMITT. 2000. Genetic and morphometric diversity in Wallacea: geographical patterning in the horseshoe bat, Rhinolophus affinis. Journal of Biogeography, 27: 193-201.
  • MAYER, F., and O. VON HELVERSEN. 2001. Cryptic diversity in European bats. Proceedings of the Royal Society of London, 268B: 1825-1832.
  • MEDWAY, LORD. 1977. Mammals of Borneo. Monograph of the Malaysian Branch of the Royal Asiatic Society, 7: 1-172.
  • MORLEY, R. J. 1998. Palynological evidence for Tertiary plant dispersals in the SE Asian region in relation to plate tectonics and climate. Pp. 211-234, in Biogeography and geological evolution of SE Asia (J. D. HOLLOWAY and R. HALL, eds.). Backhuys, Leiden, 417 pp.
  • MORLEY, R. J. 2000. Origin and evolution of tropical rain forests. John Wiley and Sons, Chichester, 362 pp.
  • RAMBAUT, A., and A. J. DRUMMOND. 2007. Tracer version 1.5. Available from http://beast.bio.ed.ac.uk/.
  • RUEDI, M., and L. FUMAGALLI. 1996. Genetic structure of gymnures (genus Hylomys: Erinaceidae) on continental islands of Southeast Asia: historical effects of fragmentation. Journal of Zoological Systematics and Evolutionary Research, 34: 153-162.
  • SIMMONS, N. 2005. Order Chiroptera. Pp. 312-529, in Mammal species of the World: a taxonomic and geographical reference (D. E. WILSON and D. M. REEDER, eds.). Johns Hopkins University Press, Baltimore, 2142 pp.
  • SOISOOK, P., S. BURUNGSRI, C. SATASOOK, V. D. THONG, S. S. HLA BU, D. L. HARRISON, and P. J. J. BATES. 2008. A taxonomic review of Rhinolophus stheno and R. malayanus (Chiroptera: Rhinolophidae) from continental Southeast Asia: an evaluation of echolocation call frequency in discriminating between cryptic species. Acta Chiropterologica, 10: 221-242.
  • TAMURA, K., D. PETERSON, N. PETERSON, S. G., M. NEI, and S. KUMAR. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28: 2731-2739.
  • THABAH, A., S. J. ROSSISTER, T. KINGSTON, S. ZHANG, S. PAR- SONS, K. M. MYA, A. ZUBAID, and G. JONES. 2006. Genetic divergence and echolocation call frequency in cryptic species of Hipposideros larvatus s. l. (Chiroptera: Hipposideridae) from the Indo-Malayan region. Biological Journal of the Linnean Society, 88: 119-130.
  • THOMAS, N. M. 1997. A systematic review of selected Afro- Asiatic Rhinolophidae (Mammalia: Chiroptera): an evaluation of taxonomic methodology. Ph.D. Thesis, University of Aberdeen, Aberdeen, 211 pp.
  • THONG, V. D., S. J. PUECHAMAILLE, A. DENZINGER, P. J. J. BATES, C. DIETZ, G. CSORBA, P. SOISOOK, E. C. TEELING, S. MATSU- MURA, N. M. FUREY, et al. 2012. Systematics of the Hipposideros turpis complex and a descrition of a new subspecies from Vietnam. Mammal Review, 42: 166-192.
  • VAN DER KAARS, S., D. PENNY, J. TIBBY, J. FLUIN, R. A. C. DAM, and P. SUPARAN. 2001. Late Quaternary palaeoecology, palynology and palaeolimnology of a tropical lowland swamp: Rawa Danau, West-Java, Indonesia. Palaeogeography, Palaeoclimatology, Palaeoecology, 171: 185-212.
  • VAN STEENIS, C. G. G. J. 1950. The delimitation of Malesia and its main plant geographical divisions. Flora Malesiana Series, 1: 70-75.
  • VAN STRIEN, N. J. 1996. The checklist mammal fauna of the Gunung Leuser National Park. Pp. 133-203, in Leuser: a Sumatran sanctuary (C. P. VAN SCHAIK and J. SUPRIATNA, eds.). Yayasan Bina Sains Hayati Indonesia, Depok, iv + 348 pp.
  • VORIS, H. K. 2000. Map of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. Journal of Biogeography, 27: 1153-1167.
  • WHITMORE, T. C. 1984. Tropical rainforests of the Far East, 2nd edition. Oxford University Press, Oxford, 352 pp.
  • WILLETTE, D. A., and J. I. M. PADIN. 2014. Identifying the biodiversity of marine jacks (Carangidae) in the freshwater Taal Lake, Philippines using phenotypic features and mitochondrial DNA. Journal of Applied Ichthyology, 30: 490-495.
  • WOODRUFF, D. S. 2010. Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today's patterns and the future of the remaining refugial-phase biodiversity. Biodiversity and Conservation, 19: 919-941.
  • WOODRUFF, D. S., and L. M. TURNER. 2009. The Indochinese- Sundaic zoogeographic transition: a description and analysis of terrestrial mammal species distributions. Journal of Biogeography, 36: 803-821.