Published April 16, 2020
| Version v 1.0
Dataset
Open
Data set for evaluation of Python scripts for computation of Protein-Ligand Interaction Fingerprints
Description
2YKI - protein-ligand complex , PDB ID 2YKI
- 2yki_MOE.pdb complex with hydrogen added and energy minimized using MOE software (https://www.chemcomp.com/)
- ligand_2yki_MOE.mol2 and ligand_2yki_MOE.pdb - ligand structure with hydrogens prepered by MOE software (https://www.chemcomp.com/)
6EI5 - MD trajectory of the protein-ligand complex generated from PDB ID 6EI5
- ref-min.pdb minimized structure
- ref.prmtop topology file
- moe.mol2 - ligand structure in mol2 format
- amber2namd2.dcd generated MD trajectory
Files
Files
(296.0 MB)
| Name | Size | Download all |
|---|---|---|
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md5:200288b3f00c10f5f25c4923fc8eb6a0
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309.5 kB | Download |
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md5:df821131e4dfed71f8407d72bd664ee3
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295.6 MB | Download |