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Published April 16, 2020 | Version v 1.0

Data set for evaluation of Python scripts for computation of Protein-Ligand Interaction Fingerprints

Authors/Creators

  • 1. HITS gGmbH

Contributors

Contact person:

  • 1. HITS gGmbH

Description

2YKI - protein-ligand complex , PDB ID 2YKI
   - 2yki_MOE.pdb complex with hydrogen added and energy minimized using MOE software (https://www.chemcomp.com/)
   -  ligand_2yki_MOE.mol2 and ligand_2yki_MOE.pdb - ligand structure with hydrogens prepered by MOE software (https://www.chemcomp.com/)

6EI5 - MD trajectory of the protein-ligand complex generated from PDB ID 6EI5
   - ref-min.pdb  minimized structure
   - ref.prmtop topology file
   - moe.mol2 - ligand structure in mol2 format
   - amber2namd2.dcd generated MD trajectory 


Files

Files (296.0 MB)

Name Size Download all
md5:200288b3f00c10f5f25c4923fc8eb6a0
309.5 kB Download
md5:df821131e4dfed71f8407d72bd664ee3
295.6 MB Download

Additional details

Funding

European Commission
HBP SGA2 - Human Brain Project Specific Grant Agreement 2 785907