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Published March 17, 2020 | Version v2
Dataset Open

ZeroCostDL4Mic - Label-free prediction (fnet) example training and test dataset

  • 1. Institute of Physical and Theoretical Chemistry, Goethe-University Frankfurt, Frankfurt, Germany

Description

Name: ZeroCostDL4Mic - Label-free prediction (fnet) example training and test dataset

(see our Wiki for details)

 

Data type: 3D paired microscopy images (fluorescence and transmitted light)

Microscopy data type: Confocal microscopy data (TOM20 labeled with Alexa Fluor 594)

Microscope: Leica SP8, HC PL APO 63x 1.40 NA oil objective 

Cell type: HeLa (fixed using an organelle-preserving protocol)

File format: .tif (8-bit)

Image size: 512 x 512 x 32 (Pixel size: x and y: 90 nm pixel size, z: 150 nm)

 

Author(s): Christoph Spahn

Contact email: c.spahn@chemie.uni-frankfurt.de, heilemann@chemie.uni-frankfurt.de

Affiliation: Institute of Physical and Theoretical Chemistry, Goethe-University Frankfurt, Frankfurt, Germany

 

Associated publications: Unpublished


Funding body(ies): M.H. and C.S.: German Science Foundation (grant nr. SFB1177). C.S.: European Molecular Biology Organization (short term fellowship 8589)

Notes

This v2 version of the fnet example dataset is a replicate of the v1 dataset where the data has been split in smaller regions of interest (512x512x32 from the 1024x1024x32 in v1).

Files

Label-free prediction (fnet) v2.zip

Files (666.1 MB)

Name Size Download all
md5:c47f8c6abfc7afd0b2a94d9dc019d543
666.1 MB Preview Download

Additional details

Related works

Is part of
Preprint: 10.1101/2020.03.20.000133 (DOI)