Summarizing the state of the terrestrial biosphere in few dimensions

This repository contains the data and a docker container to reproduce the analysis in

Kraemer, G., Camps-Valls, G., Reichstein, M., & Mahecha, M. D. (2020). Summarizing the state of the terrestrial biosphere in few dimensions. Biogeosciences, 17(9), 2397–2424. https://doi.org/10.5194/bg-17-2397-2020

If you use this data and/or code, please cite the paper.

This dataset is a subset of the DataCube v1.0.0 (https://www.earthsystemdatacube.net) plus a the FAPAR_tip dataset from DataCube v1.0.2

The code to reproduce the analysis can also be found in http://doi.org/10.5281/zenodo.3733783 and https://github.com/gdkrmr/summarizing_the_state_of_the_biosphere

To run the docker container, import the container, extract the data, run the command below, and open your web browser to access the jupyter server. Modify the command below as necessary, for details please consult the documentation for docker and jupyter:

PORT=8333
IP=0.0.0.0
docker run -it \
    -v /path/to/data/low-res/:/home/science/summarizing_biosphere/data \
    -v /path/to/results_and_temporary_files/:/home/science/summarizing_biosphere/results \
    -p $PORT:$PORT \
    summarizing_biosphere \
    /home/science/.julia/conda/3/bin/jupyter \
    notebook \
    --port=$PORT \
    --ip=$IP \
    --no-browser