There is a newer version of the record available.

Published March 27, 2020 | Version v1
Dataset Open

Silva SSU taxonomic training data formatted for DADA2 (Silva version 138)

Creators

  • 1. North Carolina State University

Description

These DADA2-formatted training fasta files were derived from the Silva Project's version 138 release. See https://www.arb-silva.de/documentation/release-138/ for database and citation information. The Silva 138 database is licensed under Creative Commons Attribution 4.0 (CC-BY 4.0); see file "SILVA_LICENSE.txt". The fasta files were generated and checked for consistency with version 132 using the R code in the R-markdown document "silva-v138.Rmd".

Files

SILVA_LICENSE.txt

Files (133.3 MB)

Name Size Download all
md5:38a2a222920f11d5c142dceaa7b63834
15.0 kB Download
md5:5311c80d208d3ae43d5dc0136df2fcab
449 Bytes Preview Download
md5:1deeaa2ecc9dbeabdcb9331a565f8343
51.4 MB Download
md5:0ba301cbdd6e3684db25fae78fad8158
81.8 MB Download

Additional details

References

  • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucl. Acids Res. 41 (D1): D590-D596.
  • Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Glöckner FO (2014) The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. Nucl. Acids Res. 42:D643-D648
  • Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. 2016. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13:581–583. doi:10.1038/nmeth.3869