Published March 26, 2020 | Version v1.0.0
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faulknerfalcons/Cheval-2020-PNAS: Analysis Scripts for Cheval, Samwald, Johnston, et al., 2020, PNAS

  • 1. Crop Genetics, John Innes Centre

Description

Chitin perception in plasmodesmata characterizes submembrane immune-signaling specificity in plants

Cheval, Samwald, Johnston, et al., 2020, PNAS, DOI: 10.1073/pnas.1907799117

A collection of R scripts to exemplify how we analysed our bombardment and FRAP data in the manuscript.

Contents

  • Combinatorics statistics R script (.R)
  • FRAP
    • Example raw data (.csv)
    • Example decay curves (.csv)
    • Example sanity checking figures (.png)
    • R scripts to analyse data (.R)

Sample data provided by Samwald, S (https://orcid.org/0000-0003-4401-8862).

Raw data, collated by figure, for use with the combinatorics script is available as a supplemental file at PNAS (distributed under Creative Commons Attribution License 4.0 (CC BY)).

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Additional details

Related works

Is cited by
Journal article: 10.1073/pnas.1907799117 (DOI)
Is supplement to
https://github.com/faulknerfalcons/Cheval-2020-PNAS/tree/v1.0.0 (URL)
Journal article: 10.1073/pnas.1907799117 (DOI)

Funding

Plasmodesmata: genetic control of cell-to-cell communication during plant defence BB/L000466/1
UK Research and Innovation
Response BBS/E/J/000PR9796
UK Research and Innovation
INTERCELLAR – The role of the symplast in host-pathogen interactions – how does the symplastic, intercellular exchange of molecules regulate the outcomes of defence and infection? 725459
European Commission