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Published March 24, 2020 | Version 202003024
Dataset Open

ReferenceSeeker Database

Authors/Creators

  • 1. Justus Liebig University Giessen

Description

This repository provides pre-built databases for ReferenceSeeker (https://github.com/oschwengers/referenceseeker) comprising taxon specific databases for complete, reference and representative RefSeq genomes.

  • archaea: 564
  • bacteria: 24,879
  • fungi: 299
  • protozoa: 88
  • viruses: 8,999

Files

Files (38.4 GB)

Name Size
md5:25d1357fd5150f30650b962b80225807
537.1 MB Download
md5:4c68a36b90ca4ca5b219ae0538881d4c
33.3 GB Download
md5:8fba7cae2a97717f13a5e7e4b85c5135
2.8 GB Download
md5:4f419ccced4222d62b33209a7684e531
1.1 GB Download
md5:6e00114dc8dcea76adcbd02a406b7789
631.1 MB Download

Additional details

Related works

Is referenced by
Software: https://github.com/oschwengers/referenceseeker (URL)

References

  • Schwengers et al. (2019). ReferenceSeeker: rapid determination of appropriate reference genomes. bioRxiv 863621; doi: https://doi.org/10.1101/863621