Terrestrial Parasite Tracker indexed biotic interactions and review summary

Terrestrial Parasite Tracker indexed biotic interactions and review summary.

The Terrestrial Parasite Tracker (TPT) project began in 2019 and is funded by the National Science foundation to mobilize data from vector and ectoparasite collections to data aggregators (e.g., iDigBio, GBIF) to help build a comprehensive picture of arthropod host-association evolution, distributions, and the ecological interactions of disease vectors which will assist scientists, educators, land managers, and policy makers. Arthropod parasites often are important to human and wildlife health and safety as vectors of pathogens, and it is critical to digitize these specimens so that they, and their biotic interaction data, will be available to help understand and predict the spread of human and wildlife disease.

This is the first archive of TPT data indexed by Global Biotic Interactions (GloBI). GloBI provides open access to finding species interaction data (e.g., predator-prey, pollinator-plant, pathogen-host, parasite-host) by combining existing open datasets using open source software.

If you have questions or comments about this publication, please open an issue at https://github.com/ParasiteTracker/tpt-reporting or contact the authors by email.

Funding:
The creation of this archive was made possible by the National Science Foundation award "Collaborative Research: Digitization TCN: Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease," Award numbers DBI:1901932 and DBI:1901926

References:
Jorrit H. Poelen, James D. Simons and Chris J. Mungall. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2014.08.005.

Datasets under review:
 - University of California Santa Barbara Invertebrate Zoology Collection accessed via https://github.com/globalbioticinteractions/ucsb-izc/archive/06fed9549ccba00aa7619f26f36b8c3c00ab2103.zip on 2020-02-23T06:13:07.994Z
 - Field Museum of Natural History IPT accessed via https://github.com/globalbioticinteractions/fmnh/archive/83cf7fca9608859f5d9f8bf702e2ab4c5e08af80.zip on 2020-02-23T06:19:16.231Z
 - Milwaukee Public Museum Biological Collections Data Portal accessed via https://github.com/globalbioticinteractions/mpm/archive/5d13126f74e13f9f1988cc8821824013405193be.zip on 2020-02-23T06:19:45.406Z
 - University of Michigan Museum of Zoology Insect Division. Full Database Export 2020-01-27 provided by Erika Tucker and Barry Oconner. accessed via https://github.com/globalbioticinteractions/ummzi/archive/32fa98582c5f7d56e04e583c787371f0c5bd1b09.zip on 2020-02-23T06:19:59.934Z
 - Illinois Natural History Survey Insect Collection accessed via https://github.com/globalbioticinteractions/inhs-insects/archive/81b23b7d7e709f992ce1e43e5e3e71eaf732e5f4.zip on 2020-02-23T06:20:15.231Z
 - Giraldo-Calderón, G. I., Emrich, S. J., MacCallum, R. M., Maslen, G., Dialynas, E., Topalis, P., … Lawson, D. (2015). VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases. Nucleic acids research, 43(Database issue), D707–D713. doi:10.1093/nar/gku1117. accessed via https://github.com/globalbioticinteractions/vectorbase/archive/2ce1516d04d5d0e5fb206c0c9b0a15fc31641c86.zip on 2020-02-23T06:20:33.826Z
 - https://vertnet.org accessed via https://github.com/globalbioticinteractions/vertnet/archive/6cdf78c1c34bdbf8a736c85ff4de9cdcd4e7b801.zip on 2020-02-23T06:38:05.946Z
 - Symbiota Collections of Arthropods Network (SCAN) accessed via https://github.com/globalbioticinteractions/scan/archive/de508d162f60698d3733199e79cff6a6bc4913ee.zip on 2020-02-23T06:42:56.881Z

Generated on:
2020-02-23

by:
GloBI's Elton 0.9.1
(see https://github.com/globalbioticinteractions/elton).

Note that all files ending with .tsv are files formatted
as UTF8 encoded tab-separated values files.

https://www.iana.org/assignments/media-types/text/tab-separated-values

Included in this review archive are:

README:
  This file (lightly edited after initial automated generation).

review_summary.tsv:
  Summary across all reviewed collections of total number of distinct review comments.

review_summary_by_collection.tsv:
  Summary by reviewed collection of total number of distinct review comments.

indexed_interactions_by_collection.tsv:
  Summary of number of indexed interaction records by institutionCode and collectionCode.

review_comments.tsv.gz:
  All review comments by collection.

indexed_interactions_full.tsv.gz:
  All indexed interactions for all reviewed collections.

indexed_interactions_simple.tsv.gz:
  All indexed interactions for all reviewed collections selecting only sourceInstitutionCode, sourceCollectionCode, sourceCatalogNumber, sourceTaxonName, interactionTypeName and targetTaxonName.

datasets_under_review.tsv:
  Details on the datasets under review.

datasets.zip:

  source datasets collected by elton in process of executing the generate_report.sh script.

generate_report.sh:
  program used to generate the report

generate_report.log:
  log file generated as part of running the generate_report.sh script