Published February 20, 2020
| Version v1.0.0
Software
Open
gghybrid: R package for evolutionary analysis of hybrids and hybrid zones.
Description
R package for analysis of hybrids and hybrid zones. Currently includes Bayesian hybrid index and genomic cline estimation for bi-allelic genomic data.
Archive contains a zip of the R source package including a Readme file.
The current version of gghybrid can also be installed from within R using the following two lines of code:
install.packages("devtools"); devtools::install_github("ribailey/gghybrid")
Files
ribailey/gghybrid-v1.0.0.zip
Files
(94.2 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/ribailey/gghybrid/tree/v1.0.0 (URL)
References
- Buerkle, C. A. (2005). Maximum likelihood estimation of a hybrid index based on molecular markers. Molecular Ecology Notes, 5(3), 684-687.
- Fitzpatrick, B. M. (2013). Alternative forms for genomic clines. Ecology and evolution, 3(7), 1951-1966.
- Hermansen JS, Haas F, Trier CN, Bailey RI, Nederbragt AJ, Marzal A, Sætre G (2014) Hybrid speciation by sorting of parental incompatibilities in Italian sparrows. Molecular Ecology 23(23): 5831-5842. https://doi.org/10.1111/mec.12910.
- Hermansen JS, Haas F, Bailey RI, Nederbragt AJ, Trier CN, Marzal A, Sætre G (2014) Data from: Hybrid speciation by sorting of parental incompatibilities in Italian sparrows. Dryad Digital Repository. https://doi.org/10.5061/dryad.v6f4d.