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ExpansionHunter Denovo: a suite of tools for detecting novel expansions of short tandem repeats

Dolzhenko, Egor; Bennett, Mark; Richmond, Phillip; Trost, Brett; Chen, Sai; van Vugt, Joke; Nguyen, Charlotte; Narzisi, Giuseppe; Gainullin, Vladimir; Gross, Andrew; Lajoie, Bryan; Taft, Ryan; Wasserman, Wyeth; Scherer, Stephen; Veldink, Jan; Bentley, David; Yuen, Ryan; Bahlo, Melanie; Eberle, Michael

ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats. EHdn is intended for analysis of a collection of BAM/CRAM files containing alignments of short (100-200bp) reads.

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