Published January 28, 2020 | Version 1.25

MetaPhyler 1.25 taxonomic profiling of the CAMI 2 Mouse Gut Toy data set, samples 0-63

Authors/Creators

  • 1. Helmholtz Centre for Infection Research

Description

Software: MetaPhyler
SoftwareVersion: 1.25
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: http://metaphyler.cbcb.umd.edu/
DockerImage: stefanjanssen/docker_profiling_tools:metaphyler
IsBiobox: True
BioboxYAMLFile: https://zenodo.org/record/3629567/files/biobox.yaml?download=1
ReferenceDatabase: 2012
ShortReadsUsed: True
LongReadsUsed: False
CommandsUsed: docker run \
--volume="/path/to/19122017_mousegut_scaffolds_yaml:/bbx/mnt/yaml:ro" \
--volume="/path/to/19122017_mousegut_scaffolds:/bbx/mnt/input:ro" \
--volume="/path/to/output:/bbx/mnt/output:rw" \
--volume="/path/to/output/metadata:/bbx/metadata:rw" \
--volume="/path/to/output/cache:/cache:rw" \
stefanjanssen/docker_profiling_tools:metaphyler

Files

Files (15.3 MB)

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md5:5e3f84a6736e6307d549eb84a7347437
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