Published January 28, 2020
| Version 1.0.0
Dataset
Open
CAMIARKQuikr 1.0.0 taxonomic profiling of the CAMI 2 Mouse Gut Toy data set, samples 0-63
Description
Software: CAMIARKQuikr
SoftwareVersion: 1.0.0
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://doi.org/10.5281/zenodo.1730572
DockerImage: stefanjanssen/docker_profiling_tools:quickr
IsBiobox: True
BioboxYAMLFile: https://zenodo.org/record/3629567/files/biobox.yaml?download=1
ReferenceDatabase: https://doi.org/10.5281/zenodo.1730572
ShortReadsUsed: True
LongReadsUsed: False
CommandsUsed: docker run \
--volume="/path/to/19122017_mousegut_scaffolds_yaml:/bbx/mnt/yaml:ro" \
--volume="/path/to/19122017_mousegut_scaffolds:/bbx/mnt/input:ro" \
--volume="/path/to/output:/bbx/mnt/output:rw" \
--volume="/path/to/output/metadata:/bbx/metadata:rw" \
--volume="/path/to/output/cache:/cache:rw" \
stefanjanssen/docker_profiling_tools:quickr
SoftwareVersion: 1.0.0
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://doi.org/10.5281/zenodo.1730572
DockerImage: stefanjanssen/docker_profiling_tools:quickr
IsBiobox: True
BioboxYAMLFile: https://zenodo.org/record/3629567/files/biobox.yaml?download=1
ReferenceDatabase: https://doi.org/10.5281/zenodo.1730572
ShortReadsUsed: True
LongReadsUsed: False
CommandsUsed: docker run \
--volume="/path/to/19122017_mousegut_scaffolds_yaml:/bbx/mnt/yaml:ro" \
--volume="/path/to/19122017_mousegut_scaffolds:/bbx/mnt/input:ro" \
--volume="/path/to/output:/bbx/mnt/output:rw" \
--volume="/path/to/output/metadata:/bbx/metadata:rw" \
--volume="/path/to/output/cache:/cache:rw" \
stefanjanssen/docker_profiling_tools:quickr
Files
Files
(13.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:e7ce815abade14026a280ec08f95cce9
|
13.5 MB | Download |