Published January 28, 2020
| Version 2.5
Dataset
Open
Bracken 2.5 taxonomic profiling of the CAMI 2 Mouse Gut Toy data set, samples 0-63
Description
Software: Bracken
SoftwareVersion: 2.5
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://github.com/jenniferlu717/Bracken
DockerImage: cami/bracken:2.5
IsBiobox: True
BioboxYAMLFile: https://zenodo.org/record/3629567/files/biobox.yaml?download=1
ReferenceDatabase: Kraken standard db built May 2019
ShortReadsUsed: True
LongReadsUsed: False
CommandsUsed: docker run \
--volume="/path/to/19122017_mousegut_scaffolds_yaml:/bbx/mnt/yaml:ro" \
--volume="/path/to/19122017_mousegut_scaffolds:/bbx/mnt/input:ro" \
--volume="/path/to/output:/bbx/mnt/output:rw" \
--volume="/path/to/output/metadata:/bbx/metadata:rw" \
--volume="/path/to/output/cache:/cache:rw" \
cami/bracken:2.5
SoftwareVersion: 2.5
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://github.com/jenniferlu717/Bracken
DockerImage: cami/bracken:2.5
IsBiobox: True
BioboxYAMLFile: https://zenodo.org/record/3629567/files/biobox.yaml?download=1
ReferenceDatabase: Kraken standard db built May 2019
ShortReadsUsed: True
LongReadsUsed: False
CommandsUsed: docker run \
--volume="/path/to/19122017_mousegut_scaffolds_yaml:/bbx/mnt/yaml:ro" \
--volume="/path/to/19122017_mousegut_scaffolds:/bbx/mnt/input:ro" \
--volume="/path/to/output:/bbx/mnt/output:rw" \
--volume="/path/to/output/metadata:/bbx/metadata:rw" \
--volume="/path/to/output/cache:/cache:rw" \
cami/bracken:2.5
Files
Files
(38.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:79b781e8a4abca00938d5357ad5059d5
|
38.2 MB | Download |