Critical Assessment of Metagenome Interpretation
Published January 28, 2020 | Version 6.15.2
Dataset Open

MEGAN 6.15.2 taxonomic binning of the CAMI 2 Mouse Gut Toy data set, gold standard pooled assembly

Authors/Creators

  • 1. Helmholtz Centre for Infection Research

Description

Taxonomic binning of the gold standard pooled assembly
Software: MEGAN
SoftwareVersion: 6.15.2
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://github.com/husonlab/megan-ce
ReferenceDatabase: NCBI nr 2019-04-17
Taxonomy: NCBI 2019-04-17
ShortReadsUsed: False
LongReadsUsed: False
CommandUsed: diamond makedb --in nr.faa.gz --db nr_diamond0.9.24 --taxonmap prot.accession2taxid.gz --taxonnodes nodes.dmp
diamond blastx -d nr_diamond0.9.24 -q anonymous_gsa_pooled.fasta -a result -t tmp --index-chunks 1
megan/tools/daa2rma -i result.daa -o 19122017_mousegut_scaffolds.rma --acc2taxa megan/prot_acc2tax-Nov2018X1.abin
#final bins extracted with MEGAN's graphical interface tool

Files

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