Critical Assessment of Metagenome Interpretation
Published January 28, 2020 | Version 1.4
Dataset Open

PhyloPythiaS+ 1.4 taxonomic binning of the CAMI 2 Mouse Gut Toy data set, gold standard pooled assembly

Authors/Creators

  • 1. Helmholtz Centre for Infection Research

Description

Taxonomic binning of the gold standard pooled assembly
Software: PhyloPythiaS+
SoftwareVersion: 1.4
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://github.com/algbioi/ppsp
DockerImage: cami/ppsp:1.4
IsBiobox: False
ReferenceDatabase: RefSeq 93, SILVA 132
Taxonomy: NCBI 2018-02-26
ShortReadsUsed: False
LongReadsUsed: False
CommandUsed: run_ppsp.py --pipelineDir ppsp_pipepline --inputFastaFile anonymous_gsa_pooled.fasta --databaseFile ncbi_taxonomy --refSeq refseq93 --s16Database SILVA_132 --mgDatabase reference_NCBI201502/mg5

Files

Files (3.5 MB)

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md5:8381e32cc96d06b1f38c6b369e223885
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