Critical Assessment of Metagenome Interpretation
Published January 28, 2020 | Version 0.9.24
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DIAMOND 0.9.24 taxonomic binning of the CAMI 2 Mouse Gut Toy data set, gold standard pooled assembly

Authors/Creators

  • 1. Helmholtz Centre for Infection Research

Description

Taxonomic binning of the gold standard pooled assembly
Software: DIAMOND
SoftwareVersion: 0.9.24
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://github.com/bbuchfink/diamond
ReferenceDatabase: NCBI nr 2019-04-17
Taxonomy: NCBI 2019-04-17
ShortReadsUsed: False
LongReadsUsed: False
CommandUsed: diamond makedb --in nr.faa.gz --db nr --taxonmap prot.accession2taxid.gz --taxonnodes nodes.dmp
diamond blastx --query anonymous_gsa_pooled.fasta --db nr --outfmt 102 --out 19122017_mousegut_scaffolds.out --block-size 40 --index-chunks 1 --tmpdir tmp

Files

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