MetaBAT 2.12.1 genome binning of the CAMI 2 Mouse Gut Toy data set, samples 0-63, gold standard pooled assembly

Genome binning of the gold standard pooled assembly
Software: MetaBAT
SoftwareVersion: 2.12.1
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://bitbucket.org/berkeleylab/metabat
ShortReadsUsed: True
LongReadsUsed: False
CommandUsed: bowtie2-build anonymous_gsa_pooled.fasta anonymous_gsa_pooled.fasta
for i in {0..63}; do bowtie2 -q --threads 30 --fr -x anonymous_gsa_pooled.fasta --interleaved sample_${i}/anonymous_reads.fq -S anonymous_reads_sample_${i}.sam ; done
for i in {0..63}; do samtools view -b sample_${i}.sam -o anonymous_reads_sample_${i}.bam & done
for i in {0..63}; do samtools sort anonymous_reads_sample_${i}.bam -o anonymous_reads_sample_${i}.sorted.bam ; done
for i in {0..63}; do samtools index anonymous_reads_sample_${i}.sorted.bam ; done
runMetaBat.sh -l anonymous_gsa_pooled.fasta anonymous_reads_sample_*.sorted.bam