Genome annotation of Macquarie perch
Authors/Creators
- 1. Deakin University
- 2. Monash University
Description
Intermediate and final files generated from the repeat masking and protein coding gene prediction of the Macquarie perch genome (NCBI Bioproject: PRJNA516983)
Repeat_Annotation.tar.gz: RepeatMasker and RepeatModeler output - contains de novo repeat library , repeat-masked (soft-masked) genome and repeat annotation in gff3 format.
BUSCO_Genome.tar.gz: BUSCO completeness (actinopterygii_odb9) calculation based on whole-genome sequence (-m genome).
BUSCO_Protein.tar.gz: BUSCO completeness (actinopterygii_odb9) calculation based on predicted proteins (-m prot)
MP.gff3: BRAKER2 annotation in gff3 format
MP.gtf: BRAKER2 annotation in gtf format
MP.codingseq.fna: BRAKER2 coding sequence output (DNA sequences)
MP.faa: BRAKER2 translated coding sequence output (protein sequences)
MP_nointernalstop.faa: Filtered BRAKER2 translated coding sequence (no sequences with internal stop codon)
Files
Files
(1.0 GB)
| Name | Size | |
|---|---|---|
|
md5:1dbe722ad839300e0c68964f63ff7398
|
111.9 MB | Download |
|
md5:59c52464696ae1a7a29ff0dea784eab7
|
20.6 MB | Download |
|
md5:f0d5fdd148b2c17b02e1e659647cc1c8
|
52.4 MB | Download |
|
md5:08d179ede2576d75a4806de60c9ced90
|
17.7 MB | Download |
|
md5:5b4585022fd3380c30ee8a8f044c9c8a
|
80.4 MB | Download |
|
md5:e073ee9d68df060edf3f305947cfeb0d
|
94.2 MB | Download |
|
md5:c90be83b922ddbb8dacb865f62699be8
|
17.6 MB | Download |
|
md5:23cf78abf14a6aa218bb00eb9ffaac21
|
611.5 MB | Download |